PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N0GNU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 297aa    MW: 34554.8 Da    PI: 6.1452
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N0GNUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ll+ +++ +G g+W+  a+  g++Rt+k+c++rw++yl
      Araip.N0GNU 30 RGPWTHEEDDLLKMCIAIHGEGRWNFLAKSSGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding47.73.6e-1583126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E +l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++
      Araip.N0GNU  83 RGNLTPQEKLLIFELHSKWGNR-WSKIAQQLP-GRTDNEIKNFWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-212380IPR009057Homeodomain-like
PROSITE profilePS5129424.1042581IPR017930Myb domain
SuperFamilySSF466892.4E-2928124IPR009057Homeodomain-like
SMARTSM007174.0E-152979IPR001005SANT/Myb domain
PfamPF002492.3E-153077IPR001005SANT/Myb domain
CDDcd001678.74E-113277No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2381132IPR009057Homeodomain-like
PROSITE profilePS5129419.02982132IPR017930Myb domain
SMARTSM007171.6E-1382130IPR001005SANT/Myb domain
PfamPF002495.5E-1483126IPR001005SANT/Myb domain
CDDcd001675.96E-1087126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSFSSKSNNK NIISCSSEDD NNNKDNELRR GPWTHEEDDL LKMCIAIHGE GRWNFLAKSS  60
GLKRTGKSCR LRWLNYLKPD VKRGNLTPQE KLLIFELHSK WGNRWSKIAQ QLPGRTDNEI  120
KNFWRTRIQK QVKYFKIDTL WRTRFVDESK ELYQEQNQNQ ALIIPTMSPD CVTQMQQYPS  180
LIEEATPTPA KTQIIPCERP SCMMNGASSN CVDYSDYENN NNNNGSSCMS FTESTNMANM  240
VQFETLDNIT NAYGMDALNI DMECQVSQSN WLDKDFVCTM WNMNMDELSH FRSIQNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25271321105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N0GNU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200196.10.0transcription factor MYB62-like
RefseqXP_025650976.10.0transcription factor MYB62-like
TrEMBLA0A444Z0G40.0A0A444Z0G4_ARAHY; Uncharacterized protein
STRINGXP_007160381.12e-85(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2979322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.18e-63myb domain protein 116