PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N1GGK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 136aa    MW: 15107.8 Da    PI: 6.7372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N1GGKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-111451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++++k +G g          + R++k+c++rw +yl
      Araip.N1GGK 14 KGAWTKEEDQRLINYIKIHGEG----------LLRCGKSCRLRWINYL 51
                     79******************99..........689***********97 PP
2Myb_DNA-binding21.65.1e-075778122
                     TSSS-HHHHHHHHHHHHHTTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                     rg++T+eEdel+++++ +lG++
      Araip.N1GGK 57 RGNFTEEEDELIINLHSLLGNN 78
                     89******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-16554IPR009057Homeodomain-like
PROSITE profilePS5129416.186955IPR017930Myb domain
SMARTSM007174.1E-71353IPR001005SANT/Myb domain
PfamPF002497.5E-91451IPR001005SANT/Myb domain
SuperFamilySSF466891.19E-171579IPR009057Homeodomain-like
CDDcd001673.23E-81651No hitNo description
PROSITE profilePS500904.8325297IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-105578IPR009057Homeodomain-like
SMARTSM007176.456115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDQRLINYIK IHGEGLLRCG KSCRLRWINY LRPDLKRGNF  60
TEEEDELIIN LHSLLGNNTN IINDNNNNKF QLVSDLVCED SSNSSSGFQS NNNKVCSCKG  120
AIVGGTAVTT TAADNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-1613772699MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N1GGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346723e-32KM034672.1 Jatropha curcas clone JcMYB052 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169145.29e-48myb-related protein 308
RefseqXP_025673277.11e-47myb-related protein 308
RefseqXP_028766124.17e-48transcription repressor MYB6-like
RefseqXP_028785141.16e-48transcription repressor MYB6-like
SwissprotP813955e-46MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A1R3GSF45e-47A0A1R3GSF4_COCAP; Uncharacterized protein
STRINGXP_006466200.11e-46(Citrus sinensis)
STRINGXP_002513249.14e-47(Ricinus communis)
STRINGXP_006426418.19e-47(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2870722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-44myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]