PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.N1TUI

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 176aa MW: 20260.4 Da PI: 10.4445

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.N1TUI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.4	6e-09	91	107	3	19
S---SGGGGTS--TTTT CS zf-CCCH 3 telCrffartGtCkyGd 19 ++lC+++++tG CkyG+ Araip.N1TUI 91 QPLCQYYMKTGSCKYGS 107 79**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.981	88	108	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-6	91	108	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MRINLHSRSE EHTQFHRKNL FILCSISFGF LVSAQWSGTT GPVRVPDLIH RRSGLELVSK 60 SRCGKLGWML KRNLIPKGLT RGGEYSERIG QPLCQYYMKT GSCKYGSSFK YNNPRQAGGS 120 ATPMSLNYKR GGDEDEFYIS IYKASYCSNG KRQMRIKIKY MNRRYGMYYV SSSLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.N1TUI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	2e-16	C3H family protein