PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N2UDW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 682aa    MW: 78442.4 Da    PI: 9.2789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N2UDWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.76e-26192281290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnHela
  Araip.N2UDW 192 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKDgSGRWYVSRFVEEHNHELA 281
                  9****************9998.8888***************997664678888999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-23192281IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.334483516IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033491518IPR006564Zinc finger, PMZ-type
SuperFamilySSF577563.77E-7620658IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.01639656IPR001878Zinc finger, CCHC-type
SMARTSM003430.0081640656IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MYGQVVRHRW LVELVAAGRE ALKVSRCLPA VAFPEAPAYK TSNRSVVWWS LLSLCLSDQL  60
SSQLPSPLVV IWAIVMHVVL FEVFVCSWQV DAVRMLESCW IVDEVIMASS SKFWKDACMW  120
NEPLADFWME GNGGVSNAQD TMFDTRVEED AELSDWEGRG ASMLPGFLGL DGLRAEDVLE  180
MEFSSPQEAG GFYNNYSRLK GFASRRGKTV RNTAGEIVRY TFVCNRQGFR EKKWLEKVDR  240
KREHKVVTRC GCMAEMRIKR KDGSGRWYVS RFVEEHNHEL AYGKLVDYLR SHRKISEVEV  300
AQLTSMREIG ISIPKIYESF AAQLGGFNLA MLNECGVREV EWVKDLYTKK HAWAIAYIRG  360
RFFAGVRTTS RCESLHAKLG RFVESRYGVL EFVRNFQRCV DFLRDTEDEL DFRSWYGTPV  420
LQTEFVELEK SGWTMFTREM FLRFRDSLKR CVRVRICEFN ETENPHAYTL QKYRRPEMNW  480
KVYRDPVANI FTCTCMRMES FGIPCVHILS VCVRLDLVEI PESLVLRRWS KAAKMEVHNQ  540
CGEQHTADRS VTYRTRVGAF SQLCKRLGRV ACMSDEDFKL YSKKLLSDAL FLKIKYGLRP  600
STDDITAAQD CGVKDPIRVR TKGTGRMSQA CGSTPKTKRK CSTCGKLGHW RTRCPNGGAQ  660
PSPRNDKSPA GINKRKRSKV TA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445450DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N2UDW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178059.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Z0I70.0A0A444Z0I7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-22FAR1-related sequence 5