PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N5IED
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 191aa    MW: 22005.8 Da    PI: 6.2867
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N5IEDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.71.3e-2586176291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  fYn+Y+   GF +r+ k+ ++   g i+++tfvC++eg++e++  + t+++r+++++tr+gC a++++k+++ +gkw+v  +  eHnHel p
  Araip.N5IED  86 FYNKYSCIKGFATRQGKKVRN-IVGDIVRYTFVCNREGFKEKKWLEnTDRKREHKVVTRCGCMAEMRIKRKDgSGKWYVLLFIDEHNHELLP 176
                  9****************9998.7777**************999766478899999**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2386176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTSSSSKAED PWKWNVAMVE KFSQAQTDYA DEGEALFDLG TDREVVVGDL DCNNEGASVG  60
YIDMGGLRSE DVLLMEFNTP EEARGFYNKY SCIKGFATRQ GKKVRNIVGD IVRYTFVCNR  120
EGFKEKKWLE NTDRKREHKV VTRCGCMAEM RIKRKDGSGK WYVLLFIDEH NHELLPGKFV  180
DFLRSQENFR G
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N5IED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963428.11e-141protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y9W41e-134A0A444Y9W4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-18FAR1-related sequence 5