PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N5MMK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 469aa    MW: 51795.8 Da    PI: 6.9136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N5MMKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-093103451454
                  HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  dr+N+++++L+el+P++      K +Ka++L  A++Y+k L
  Araip.N5MMK 310 DRVNKRIHTLKELIPNC-----NKIDKASTLDDAIDYLKTL 345
                  79**************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.627296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-8304350No hitNo description
SuperFamilySSF474598.11E-12305356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-9307351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7310345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNPLMGENMF NSSRTGMTRS SSLLHVNKDI GELVWENGEV KVQGRGAAVE ERAAKLERFY  60
CSSILDQSKK QIQQGFSNFK LISNTYSSSL SQQCKKPRII DFSGSAQATT KSHTLQHLGT  120
CNNNNNQRTS LGGGMVNFPN FLVPSLLLNK SSSAAAAATS SKGHDHSSVV IDSSNNNKAA  180
TQELKETPFH QVQPLDRHSH AQKPYHGASS SSAAPPPPNY NSNNNIEQHL VVASSPVSSI  240
GASNDPDIGI MRKQHEEYSN ITDHDHDDTT TYISDDDDEE TEDVIIAKET PAAGTRAKRS  300
RDPEVHNLSD RVNKRIHTLK ELIPNCNKID KASTLDDAID YLKTLKLQLQ IMSMGRGLCM  360
PLMMLHNHHN QLMCYRPSSG TGIPHQNMFD GFFNQMRPMI MPPSPLFINP TPPIAPLSIA  420
NSSSLDVSHV QAINNGDQVS LHQHTTSSSY PFYFPTIINQ EEKNNYGME
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N5MMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205679.10.0transcription factor APG isoform X1
RefseqXP_025661886.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X3
TrEMBLA0A444YJA10.0A0A444YJA1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-21phytochrome interacting factor 3