PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.N5Q83

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 693aa MW: 77609.7 Da PI: 6.1132

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.N5Q83	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.5	4.6e-113	325	690	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+av+s d++ a+++L+++++++ +gd +qRla+yf+ +L++rla ++ k + +++s ++ l+a+k++ + P+ ++s+++aN+ Araip.N5Q83 325 SLLTQCAQAVASYDQRSANEILKQIRQNSPASGDGLQRLAKYFADGLESRLAA---GTPKYILLQSAS---AADMLKAYKVYITAIPFQRMSNFLANR 416 79************************************************9...444444444444...789******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +Il+ +++e+ +HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL+++++++gvpfe+n +a+++e+++le+L++ Araip.N5Q83 417 TILKLAQNESSLHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDLPQPGfrPAERVEETGRRLKNYCKRFGVPFEYNC-LAQKWETIQLEDLNI 513 ************************************************9*************************.6********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++E+++Vn+ ++l++l de+v+ + +rd+vL+l+++++P+++++ + +n++ Fl+rf eal ++salfd++ea++pr++ +r + E+ l+gr++ Araip.N5Q83 514 DRNEVTVVNCLYRLKNLSDETVTANCPRDAVLRLIRRINPNIFIHGVINGTYNAPFFLTRFREALFHFSALFDMFEATVPRDNPHRLMFEQGLFGRDA 611 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+acegaer+er et+++W+ r ++aGFk++++ + + +k +++k + + + v+e+ +++++gWk+r L ++S W Araip.N5Q83 612 INVIACEGAERVERPETYKQWQVRNRRAGFKQLAIAPELLNRVKGMVKKEYHKDFVVDEDGKWVLQGWKGRILHALSPW 690 ***********************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.646	297	671	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-110	325	690	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MISADSRTEN YAGFVYENGP MSVFSNSNNH QNPENVFKFE DSSSNHAESP TSDDPDGTNN 60 GESHAESTKH SNPILRYISE ILLDEEDDLQ QKPCMLHDCL KLQAAEKGFY DAIGRSYPSS 120 PSKIYGGFGD DCHDPDDSNF GRTTSSESNS SSYNTSENSC ESDWFNGWGD FESKFLQNTL 180 IESPEIKNSY EVLGLGNSQI RDSHGSVYFQ NGTLHNIIPD MLPPITGGGS GRSREKRSHH 240 VDDATQEGER GNKLSAVYAD ESEPLEMFDA VLLCQDGKSP AIFCGDRESD SGGSNVKASR 300 SKKGANKGGA TNKGGTISTT VDLWSLLTQC AQAVASYDQR SANEILKQIR QNSPASGDGL 360 QRLAKYFADG LESRLAAGTP KYILLQSASA ADMLKAYKVY ITAIPFQRMS NFLANRTILK 420 LAQNESSLHI IDFGIFYGFQ WPCLIQRLSE RPGGPPRLRI TGIDLPQPGF RPAERVEETG 480 RRLKNYCKRF GVPFEYNCLA QKWETIQLED LNIDRNEVTV VNCLYRLKNL SDETVTANCP 540 RDAVLRLIRR INPNIFIHGV INGTYNAPFF LTRFREALFH FSALFDMFEA TVPRDNPHRL 600 MFEQGLFGRD AINVIACEGA ERVERPETYK QWQVRNRRAG FKQLAIAPEL LNRVKGMVKK 660 EYHKDFVVDE DGKWVLQGWK GRILHALSPW VPA

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MISADSRTEN YAGFVYENGP MSVFSNSNNH QNPENVFKFE DSSSNHAESP TSDDPDGTNN  60
GESHAESTKH SNPILRYISE ILLDEEDDLQ QKPCMLHDCL KLQAAEKGFY DAIGRSYPSS  120
PSKIYGGFGD DCHDPDDSNF GRTTSSESNS SSYNTSENSC ESDWFNGWGD FESKFLQNTL  180
IESPEIKNSY EVLGLGNSQI RDSHGSVYFQ NGTLHNIIPD MLPPITGGGS GRSREKRSHH  240
VDDATQEGER GNKLSAVYAD ESEPLEMFDA VLLCQDGKSP AIFCGDRESD SGGSNVKASR  300
SKKGANKGGA TNKGGTISTT VDLWSLLTQC AQAVASYDQR SANEILKQIR QNSPASGDGL  360
QRLAKYFADG LESRLAAGTP KYILLQSASA ADMLKAYKVY ITAIPFQRMS NFLANRTILK  420
LAQNESSLHI IDFGIFYGFQ WPCLIQRLSE RPGGPPRLRI TGIDLPQPGF RPAERVEETG  480
RRLKNYCKRF GVPFEYNCLA QKWETIQLED LNIDRNEVTV VNCLYRLKNL SDETVTANCP  540
RDAVLRLIRR INPNIFIHGV INGTYNAPFF LTRFREALFH FSALFDMFEA TVPRDNPHRL  600
MFEQGLFGRD AINVIACEGA ERVERPETYK QWQVRNRRAG FKQLAIAPEL LNRVKGMVKK  660
EYHKDFVVDE DGKWVLQGWK GRILHALSPW VPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-49	329	692	25	380	Protein SCARECROW
5b3h_A	2e-49	329	692	24	379	Protein SCARECROW
5b3h_D	2e-49	329	692	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.N5Q83

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187270.1	0.0	scarecrow-like protein 30 isoform X1
Refseq	XP_025641975.1	0.0	scarecrow-like protein 30 isoform X1
TrEMBL	A0A445A9G4	0.0	A0A445A9G4_ARAHY; Uncharacterized protein
STRING	GLYMA12G06630.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-171	SCARECROW-like 14