PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.N5YD6

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YA

Protein Properties

Length: 254aa MW: 27726.4 Da PI: 10.3436

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.N5YD6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	97	2e-30	80	135	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p YVNaKQy++I++RRq+Rak+ +kl +k rkpy+heSRh hA+rRpRg+gGrF Araip.N5YD6 80 GPTYVNAKQYHGIIRRRQSRAKAVLANKL-IKRRKPYMHESRHLHAMRRPRGCGGRF 135 79*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-34	77	138	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.608	78	138	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.9E-26	81	135	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.9E-23	81	103	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.9E-23	112	135	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MKKTSPEDCK ISGESQKSQA TLSLQPSNAD PRNRFELGFT QPMICAKYPY MDQFYGLFSA 60 YAPQISGRIM LPLNLTSDDG PTYVNAKQYH GIIRRRQSRA KAVLANKLIK RRKPYMHESR 120 HLHAMRRPRG CGGRFLNTRN SATNNGNGKS GSEANKKTLG HQLHSSGSQS SEVLQSSAGT 180 LNSLKEPNGS SPNISLEVTS MYSSRGGIDG FAINHIGTPM HSLADMMDTG HGHGMIMPPK 240 WVSAAAGNCC NLNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-16	79	141	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	112	RRRQSRAKAVLANKLIKRRK
2	93	113	RRRQSRAKAVLANKLIKRRKP
3	94	113	RRQSRAKAVLANKLIKRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.N5YD6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020972311.1	0.0	nuclear transcription factor Y subunit A-10-like isoform X3
Swissprot	Q9M9X4	2e-51	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A445E7I6	0.0	A0A445E7I6_ARAHY; Uncharacterized protein
STRING	XP_007162983.1	1e-131	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	1e-49	nuclear factor Y, subunit A10

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]