PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N681H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 247aa    MW: 27357 Da    PI: 5.5087
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N681HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.62e-337101194
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                  +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp  +r +a+ ++ yeA+ar++dP+yG+v  +++    l++ +a+ 
  Araip.N681H   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVGDRCEAAVTISYEAQARLQDPIYGCVVNLQAQLAYLKEQAAQQ 101
                  7*************************89*************************************************987766666666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7786108IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-317100IPR004883Lateral organ boundaries, LOB
PROSITE patternPS000180122134IPR018247EF-Hand 1, calcium-binding site
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVGD  60
RCEAAVTISY EAQARLQDPI YGCVVNLQAQ LAYLKEQAAQ QSCVNGGNPN HERYFDKPNI  120
ADNNNNNFIT PQDLQSWLFN MENSSSSNLG GLESLHPNLC NNNDSSYYGS DGNNNNNNNN  180
VNNSMMMMMD LKPINNDGSY YENSNSFSSF EESSSNSMSY DMETNGGTKW SFHEVDDLHS  240
VAFGYRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-303977103LOB family transfactor Ramosa2.1
5ly0_B4e-303977103LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N681H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186488.11e-151LOB domain-containing protein 14-like
RefseqXP_025635292.11e-151LOB domain-containing protein 14-like
TrEMBLA0A445AEQ81e-150A0A445AEQ8_ARAHY; Uncharacterized protein
STRINGGLYMA13G18210.12e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-56lateral organ boundaries-domain 29