PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N6BRL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 114aa    MW: 13297.7 Da    PI: 8.5121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N6BRLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.62e-2025103131214
         GRAS 131 aLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                  +L++Rp+gpp+l+iTg++     +ke l ++++rL +  e+l++pf+fn  v ++le+l++e+++vk++ ala+ ++lqlh+ll
  Araip.N6BRL  25 TLSARPKGPPHLKITGIHW----KKEILDQIAHRLIEEVEKLNIPFSFNH-VFSKLESLDFEKFSVKTEKALAITSILQLHSLL 103
                  599****************....9**************************.799***************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.9151114IPR005202Transcription factor GRAS
PfamPF035147.1E-1825103IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MVMVFEVLTR KLFYEIFFMD CTPPTLSARP KGPPHLKITG IHWKKEILDQ IAHRLIEEVE  60
KLNIPFSFNH VFSKLESLDF EKFSVKTEKA LAITSILQLH SLLVWDDKAV EKKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N6BRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187875.12e-40scarecrow-like protein 3
RefseqXP_020973780.12e-40scarecrow-like protein 3
RefseqXP_025642723.12e-40scarecrow-like protein 3
SwissprotQ9LPR84e-30SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A151TLX32e-38A0A151TLX3_CAJCA; Scarecrow-like protein 3
TrEMBLA0A445A7K83e-38A0A445A7K8_ARAHY; Uncharacterized protein
STRINGXP_007131568.11e-38(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-32scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]