PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N6C0B
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 328aa    MW: 36525.9 Da    PI: 9.9515
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N6C0BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.95.8e-0995140955
          AP2   9 dkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++gr++A+++d  ++   + ++   gk gt eeAa+a++ a+ +++g
  Araip.N6C0B  95 HRWTGRYEAHLWDkGTW---NpTQKKKGKQGTQEEAARAYDIAAIEYRG 140
                  899**********5555...5699999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.97E-1578150No hitNo description
SMARTSM003801.9E-1179154IPR001471AP2/ERF domain
PROSITE profilePS5103214.63179148IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-994150IPR016177DNA-binding domain
PfamPF008471.9E-495140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-795149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELASVKSEF NPRCNRLHVM VDGSEANASK GIKRRRRDSS LPLPLTVLGG NEQQGEQPEA  60
QQTPQSGQST PSTVKRSSRF RGVSRHDKMI SKKLHRWTGR YEAHLWDKGT WNPTQKKKGK  120
QGTQEEAARA YDIAAIEYRG INAVTNFDLS TYIRWLRPGG VHSTTSQDQK PSTDPQIFTT  180
SNPILATGAT ELSNFNFHPV PASELDITKK KEFSKFAAPL SPCYKSPSSS PTALGLLLKS  240
SMFRELMQRN LNSADEEAEE VELKYPQEGS DGIGGILNKN DTNSISYFGS SSNINRLPNL  300
VSRESSKMPM YHRTVMPSLW NGAFNISD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N6C0B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352355e-51AC235235.1 Glycine max strain Williams 82 clone GM_WBb0028H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190971.11e-150AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_025639005.11e-150AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A445DP211e-149A0A445DP21_ARAHY; Uncharacterized protein
STRINGGLYMA18G16236.13e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.19e-14AP2 family protein