PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N9DIE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 189aa    MW: 21180.5 Da    PI: 8.9727
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N9DIEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.48.7e-4367142277
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  Cq+e+C adl+eak+yhrrhkvCe+hskapvv+v+g++qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk++
  Araip.N9DIE  67 CQAERCGADLTEAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSN 142
                  **************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-3660128IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.74464141IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3965144IPR004333Transcription factor, SBP-box
PfamPF031104.8E-3267140IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEARMRRTTV EKMRKDSTVD EVEEELEEED ESGVGDGVLA EEEKKKSAVG SGRRGSNGAG  60
GVSPPSCQAE RCGADLTEAK RYHRRHKVCE FHSKAPVVVV AGMRQRFCQQ CSRFHDLAEF  120
DEAKRSCRRR LAGHNERRRK SNIEPCNEGS GRGGKGQPPK ESHCRNTDDR GRTQMNISGS  180
SGYKSFHIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3855140184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N9DIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169332.11e-136squamosa promoter-binding protein 1
RefseqXP_025672269.11e-136squamosa promoter-binding protein 1
SwissprotQ387416e-43SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A444Y4111e-135A0A444Y411_ARAHY; Uncharacterized protein
STRINGGLYMA13G35000.19e-75(Glycine max)
STRINGXP_007149482.11e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-42squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]