PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NDM7B
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 229aa    MW: 25835.8 Da    PI: 7.8079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NDM7BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113759123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Araip.NDM7B 37 YTCTFCRREFRSAQALGGHMNVH 59
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-63464No hitNo description
Gene3DG3DSA:3.30.160.609.0E-43562IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00663759IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-53760IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1573764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MWNPREQHQE DDDSWEVRAF AEDTRNIMGT TWPPRSYTCT FCRREFRSAQ ALGGHMNVHR  60
RDRARLHHHQ PPLPPPPPPP PPPFPHHHLH QYPSPAAFIN VPHRHHQDLV SNATGLCVFY  120
HLPPSPNRTT TFATPSPSPS PSTLLSMTSS SSSSYYPQNN LMTMMQPLCS PSLDLPSGIN  180
GVSSSSPSYS TKVIEEALVN NNNNGHHHHL EELDLELRLG QKRPPTRPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-133259229superman protein
2l1o_A4e-133259229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NDM7B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0384854e-63HM038485.1 Glycine max PALMATE-LIKE PENTAFOLIATA1 (PALM1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200619.11e-168transcriptional regulator SUPERMAN
TrEMBLA0A444ZAV61e-110A0A444ZAV6_ARAHY; Uncharacterized protein
STRINGAES944393e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-33C2H2 family protein