PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NGA0T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 333aa    MW: 37240.6 Da    PI: 5.1021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NGA0TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-1759103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
      Araip.NGA0T  59 RGNISEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 103
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.263153IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-113965IPR009057Homeodomain-like
SuperFamilySSF466891.67E-1939110IPR009057Homeodomain-like
PROSITE profilePS5129424.99254108IPR017930Myb domain
SMARTSM007174.6E-1658106IPR001005SANT/Myb domain
PfamPF002495.6E-1559104IPR001005SANT/Myb domain
CDDcd001677.12E-1363104No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2066104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
QLKKTKSSEI ISVSMAKENG GTFLKEQMLR EMCGCVGLKR CGKSCRLRWL NYLRPDIKRG  60
NISEDEEELI IRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NTNLGKRVRD LQTISSASSQ  120
QPNETNNNNN IQKPTTMPPS TNKVVSTTTP SLSPLNDSHS LLVRTKASKC SKSLFLDHSS  180
TTTTSLQQNK TSSSNNNNNN SHGLDETAAD HVLLPPPGLL LPRNGDNNNN NTMVMMMMEM  240
GTNSEEYKEI STTELLLDFD VGDICLHSLL NSDFEDICDF GYNNSNSNCE DLFGFSPPEQ  300
MQLDSSDEVL KEATVPSNFP DETNNIVENI QFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-204010840108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NGA0T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192235.10.0anthocyanin regulatory C1 protein-like, partial
TrEMBLA0A445A1R90.0A0A445A1R9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-44MYB family protein