PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NGJ26

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 242aa MW: 28093 Da PI: 8.5915

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NGJ26	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.1	9.1e-16	50	136	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i++r Cs+eg+ +++ + + +t+++ +C ++ v+ +k g w + k++l+H+H+++p Araip.NGJ26 50 KFYKHYSKLAGFSTKIRNTTRD--GDKIKNRLIICSREGRLKSKISP---TLKTNPSAGLNCPTRIYVHIMKdVGLWTIFKVVLNHSHPCCP 136 6**************98776..8889********9998776...999**************999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-13	50	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MNESTSNQLN ECDLDDSSET HQFDETDYVV DEKFVPKVGM IFKTLEEARK FYKHYSKLAG 60 FSTKIRNTTR DGDKIKNRLI ICSREGRLKS KISPTLKTNP SAGLNCPTRI YVHIMKDVGL 120 WTIFKVVLNH SHPCCPDQAE ILKQHRELSM FVRRTIETHE EARIRLSKTY QSFVAAAGSH 180 PCTVFGSPDL ISLVWFTELS EDRHIWILVY LDHHFWAGMS TQRSESMHSF FNKFITRNSS 240 LR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NGJ26

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172294.1	1e-114	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445B8J0	1e-130	A0A445B8J0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-12	FAR1 family protein