PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NKQ82
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 494aa    MW: 57321.2 Da    PI: 9.1359
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NKQ82genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.4e-1851136190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cskegk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+ +
  Araip.NKQ82  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSKEGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPSC 136
                  6****************98887..8889*************998877...8999**************998879**************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.062300336IPR007527Zinc finger, SWIM-type
PfamPF044346.3E-5301333IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDDLTSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVPKVR MTFTTLEDVG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSKEGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPSCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNYLG SREQVERESD TEDFHTVIPC  240
ATKSSIEDQF QDVYTHQKFR KVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVFSSIFNKF  300
VVTYDSVAVE VKCQCLLFES RGILCRHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLE PRSKRFDQLV FRSQNICEFA SESEELTAIL HHAYDNVMVE MESLKAKRKG  420
TYSLSHEDAN LKFVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KALNELNLFD  480
QWCIQILANI KHVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NKQ82
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-36far-red elongated hypocotyls 3