PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NP2N9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 498aa MW: 53940.6 Da PI: 4.5916

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NP2N9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2.1e-11	186	207	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++tG Ck+G +CkF+H+ Araip.NP2N9 186 DCAFYMKTGNCKFGINCKFNHP 207 7********************8 PP
2	zf-CCCH	31.2	3.8e-10	261	278	9	26
GGGTS--TTTTT-SS-SS CS zf-CCCH 9 fartGtCkyGdrCkFaHg 26 ++rtG Ck+G++CkF+H+ Araip.NP2N9 261 YMRTGSCKFGANCKFNHP 278 9****************9 PP
3	zf-CCCH	29.3	1.5e-09	405	431	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Araip.NP2N9 405 PGEPECSYFLKTGDCKFKSNCKFHHPK 431 5799*********************96 PP
4	zf-CCCH	27.3	6.1e-09	454	476	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C+++ r+G Ck+G+ Ck+ H+ Araip.NP2N9 454 NACMHYTRYGLCKFGPACKYDHP 476 57********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.84E-6	180	210	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	181	209	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-5	181	208	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-9	186	207	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	187	207	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.253	251	280	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.8	256	279	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.3E-4	261	277	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-7	261	278	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-4	404	431	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.061	404	432	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-7	406	431	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	409	434	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.892	450	478	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.2E-4	451	477	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	452	479	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.2E-7	453	476	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MEHTESDSAS SSLPNGGGDS ITATQQDPQL APSSNHGTDD PQPSDLYQTA KDGSLSAELQ 60 SKLDLKGLEG VGEEGGEIGD KVSNFGQVGG GVDDGGVTNG DDEVVNGCDE GFKGGGGDGD 120 NWGWETNSWE EENVNVGLVD GDYDGLVNGY VDADGGDDVD GDEKREEKNG GGRAQHQYPW 180 RPDAQDCAFY MKTGNCKFGI NCKFNHPINR RKNQAVKEWP AEREEEQAER SGQTECKLPK 240 TVTSEILFWL IXXXXXXXXX YMRTGSCKFG ANCKFNHPDP TTVGGSESSP GYSNGGSDPS 300 SRYSNGRSNT SSGYSNGGSI SLHGVSQQSV STWSSPRTVN ETSPFVPMML SPPSPDWNAY 360 QAPTYLSERS MHPPPPYVMN NPVIETNVYI HPQKRIQVDD FPERPGEPEC SYFLKTGDCK 420 FKSNCKFHHP KNRIATLPPC NLNDKGLPLR PDKNACMHYT RYGLCKFGPA CKYDHPINPV 480 PPTGVEVDGM GGNGGAVQ

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MEHTESDSAS SSLPNGGGDS ITATQQDPQL APSSNHGTDD PQPSDLYQTA KDGSLSAELQ  60
SKLDLKGLEG VGEEGGEIGD KVSNFGQVGG GVDDGGVTNG DDEVVNGCDE GFKGGGGDGD  120
NWGWETNSWE EENVNVGLVD GDYDGLVNGY VDADGGDDVD GDEKREEKNG GGRAQHQYPW  180
RPDAQDCAFY MKTGNCKFGI NCKFNHPINR RKNQAVKEWP AEREEEQAER SGQTECKLPK  240
TVTSEILFWL IXXXXXXXXX YMRTGSCKFG ANCKFNHPDP TTVGGSESSP GYSNGGSDPS  300
SRYSNGRSNT SSGYSNGGSI SLHGVSQQSV STWSSPRTVN ETSPFVPMML SPPSPDWNAY  360
QAPTYLSERS MHPPPPYVMN NPVIETNVYI HPQKRIQVDD FPERPGEPEC SYFLKTGDCK  420
FKSNCKFHHP KNRIATLPPC NLNDKGLPLR PDKNACMHYT RYGLCKFGPA CKYDHPINPV  480
PPTGVEVDGM GGNGGAVQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NP2N9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-48	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016189831.1	0.0	zinc finger CCCH domain-containing protein 43 isoform X1
Swissprot	Q9STM4	2e-91	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A445EQT6	0.0	A0A445EQT6_ARAHY; Uncharacterized protein
STRING	GLYMA17G13580.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-87	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]