PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NW1RI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 683aa    MW: 76807.6 Da    PI: 6.2637
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NW1RIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.2e-24117218199
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r+++t+GW+ Fv +++L +gD++vF   + +++el+
  Araip.NW1RI 117 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFL--RGHNGELR 212
                  99****************************977777888*************************************************..3489999* PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v+++r+
  Araip.NW1RI 213 VGLRRN 218
                  ***997 PP
2Auxin_resp92.47.3e-31243324183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedss..errlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F v+Y+Pr   s+F+v ++k+++a+++k++v mRfkm+fe+ed +  err+sGt+vgv+d++p  W nS+WrsLk
  Araip.NW1RI 243 ASHAVATQTLFVVYYKPRR--SQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPenERRFSGTIVGVEDISP-YWVNSNWRSLK 324
                  789***************6..9*******************************86226889***********9.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-38109246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-40110232IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-20115217No hitNo description
PROSITE profilePS5086312.252117219IPR003340B3 DNA binding domain
PfamPF023624.9E-22117218IPR003340B3 DNA binding domain
SMARTSM010194.9E-23117219IPR003340B3 DNA binding domain
PfamPF065072.9E-29243324IPR010525Auxin response factor
PfamPF023094.4E-11553655IPR033389AUX/IAA domain
PROSITE profilePS5174526.393571652IPR000270PB1 domain
SuperFamilySSF542778.34E-13575647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MLNRRGGEED ELYEQLWEAC AGPHVDVPRS GQRVFYFPQG HMEQLEESTN QELNQRIPVF  60
KLPTKILCRV VNVHLLAEQE TDEVYAQITL VPESNQAEPT SPDSCPAELP RPQNHSFCKV  120
LTASDTSTHG GFSVLRKHAT ECLPALDMSQ PTPTQELVAK DLHGYEWRFK HIFRGQPRRH  180
LITTGWSTFV ASKRLVAGDT FVFLRGHNGE LRVGLRRNTP QPSSMPSSVI SSQSMHLGVL  240
ATASHAVATQ TLFVVYYKPR RSQFIVGLNK YLEAMNHKFA VAMRFKMRFE GEDTPENERR  300
FSGTIVGVED ISPYWVNSNW RSLKVLWDEP ASVPRPDRVS PWEIEPLMAS VVTSSLQSPV  360
LKNKRPRLPG EVHELDTRSA ASTFWDAALA HSDVTQLSVI AESNMSDSTH VWNHKLIDNS  420
KGSYNAMSRI QTEAIRVSSP HSSGPSQLFL DTTFDDGKRL NNNDHLLDQV DKEHKMETAT  480
SCRLFGIELI DHAKNSPVVE KAPSVANASG VTNEGSVNTM SRTDADQNSD MVKTSNKERK  540
HEEPPQVSKR ETQSKQICSR SCTKVNVCIV ETCEKVQMQG VAVGRAIDLT MLEGYDQLVE  600
ELEKLFDIKG ELQHRNTWQI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVKKMSS  660
VRTKVPLSLT EEETVISSDT AGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1641034717355Auxin response factor 1
4ldw_A1e-1641034717355Auxin response factor 1
4ldw_B1e-1641034717355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NW1RI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-37AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016198542.10.0auxin response factor 9
RefseqXP_016198543.10.0auxin response factor 9
RefseqXP_020976994.10.0auxin response factor 9
RefseqXP_025648598.10.0auxin response factor 9 isoform X1
RefseqXP_025648599.10.0auxin response factor 9 isoform X1
RefseqXP_029147976.10.0auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A444ZNN20.0A0A444ZNN2_ARAHY; Auxin response factor
STRINGGLYMA03G17450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9