PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NX7E8

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 181aa MW: 20534.2 Da PI: 5.2638

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NX7E8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.6	1.2e-28	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K vk++++ r+YY+C+s+gC vkk+ver+++d ++v++tYeg Hnh Araip.NX7E8 118 MDDGYRWRKYGKKAVKNTPNLRNYYKCSSEGCGVKKRVERDRDDSSYVITTYEGIHNHA 176 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-32	105	178	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-27	110	178	IPR003657	WRKY domain
PROSITE profile	PS50811	30.251	113	178	IPR003657	WRKY domain
SMART	SM00774	5.1E-33	118	177	IPR003657	WRKY domain
Pfam	PF03106	2.6E-23	119	175	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MDYYYVNPIN PNYGAHHDDD DYSAMMSMSD FMISDFLVAD DDAYGYGVDD HHHNNQESGS 60 QSQSTNESSE MAAFSDVTTT NNSGEASSIN NNIKCKNGSK KEVNSRVAFR TKSELDVMDD 120 GYRWRKYGKK AVKNTPNLRN YYKCSSEGCG VKKRVERDRD DSSYVITTYE GIHNHASPFT 180 Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	108	178	7	77	Probable WRKY transcription factor 4
2lex_A	6e-26	108	178	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NX7E8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016193573.1	1e-133	probable WRKY transcription factor 50 isoform X1
Refseq	XP_025637914.1	1e-133	probable WRKY transcription factor 50
Swissprot	Q93WU9	2e-39	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A444ZXC2	1e-132	A0A444ZXC2_ARAHY; Uncharacterized protein
STRING	AET04594	5e-59	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	3e-41	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]