PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NYM6Q
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 702aa    MW: 78039.4 Da    PI: 7.8939
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NYM6QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23112213199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD+vvF   + +++ 
  Araip.NYM6Q 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFL--RAENGD 205
                  89****************************986445444..8************************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Araip.NYM6Q 206 LCVGIRRA 213
                  9****997 PP
2Auxin_resp112.25.1e-37287370183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a+ +++FevvY+Prast+eF++k+++v++a++++++ GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr L+
  Araip.NYM6Q 287 AVSMAARNQAFEVVYSPRASTPEFCIKASSVSDAMRIQWCSGMRFKMPFETEDSSRISWfMGTVASVQVADPIRWPNSPWRILQ 370
                  5778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-3097214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-37104215IPR015300DNA-binding pseudobarrel domain
CDDcd100173.82E-21111212No hitNo description
SMARTSM010196.1E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971112214IPR003340B3 DNA binding domain
PfamPF023627.8E-22112213IPR003340B3 DNA binding domain
PfamPF065075.5E-32287370IPR010525Auxin response factor
PROSITE profilePS5174518.661590673IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MKEGEKSLDP QLWHACAGSM VQMPQVNSKV FYFPQGHAEH AQTAIDLSTP SLRVPPLIPC  60
RVATVRFMAD PETDEVFAKI KLVPLKSSEL DQNDNTLEGE VVVENQEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVVAKDVHGE LWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSVVFLR AENGDLCVGI RRAKRGIGIG IGGGCEGSSL WSSASSGNGN  240
SNGGPYGALS MFLREENNKL LRNSNGRCSY SSSSSSSRVR AEDVVEAVSM AARNQAFEVV  300
YSPRASTPEF CIKASSVSDA MRIQWCSGMR FKMPFETEDS SRISWFMGTV ASVQVADPIR  360
WPNSPWRILQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPIIN ISPFSPPRKK LRFPQHPDFP  420
QDIQFTSLPT FPGNYIGPNS PMYCLSENAP ASIQGTRHAQ IGISLSDFHL SNKLQLGLLP  480
TSIHRLDVHN RDMTNHDKSK ESLSCLLTMG KSNKSLENSD NNVKTHQFLL FGQPILTEQQ  540
ISRTGKDSPD ETKIKEKCFL GEAKFAVSQH IPPGKASNAA EFSWQIGLET SHCKVFLESE  600
DVGRTLDLSS LGSYEELYRK LANMFDMERS EIFNHVLYRD ETSAVKKIGE EPFSEFMKTA  660
KRLTILMDSS SKNIRRAWIT GSRSGEHGID ASNKTGPLSI FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-77839151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NYM6Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187440.10.0auxin response factor 10-like
RefseqXP_025641775.10.0auxin response factor 10
RefseqXP_029147205.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445AA040.0A0A445AA04_ARAHY; Auxin response factor
STRINGGLYMA12G08110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]