PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P0SZ5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 622aa    MW: 71120.5 Da    PI: 7.1911
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P0SZ5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11.1e-16153239189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +fY +YAk+vGF +++++++  k +++ ++++  C++ g+r ++ k+   + r++  +  gCka++ vk +k ++ w+  k+el H+H++
  Araip.P0SZ5 153 EFYVTYAKKVGFATKIRTTTCDKITNQPINQDIHCNRDGYRVSRVKA---SMRKNRISPAGCKARIYVKFDKeTQDWVFFKVELSHSHPC 239
                  6*******************************************999...788888999***********9999**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-15153240IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.73407443IPR007527Zinc finger, SWIM-type
SMARTSM005750.0098418445IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MNRDHFYLSG ADRSKNAAHL SRRYYLISSL ALSPREVDVR TGEHPEAHSE RVTPFGGTAS  60
RPSERVAPSV DNKTNCIGIV KTFLVNAMPR LDITEVGSEE MDICYEDMPL LGLSQVGSEE  120
MDPGHQVPDH DGLREDEIPC VGMRFDQLQM AHEFYVTYAK KVGFATKIRT TTCDKITNQP  180
INQDIHCNRD GYRVSRVKAS MRKNRISPAG CKARIYVKFD KETQDWVFFK VELSHSHPCS  240
ARKAVHYHEY RQLTMHAKCV DLYDLIRNLF DDRRMWVPIY FKGELWAAMR STQMRESMHS  300
FYENFLHSRT SLVQFVHEYD NVLGINEQRE LEDDAADSRG VIPCATTSSM EKQFQHEYTT  360
CVFRDVQIEF VKKANCRVSV VAEEGPVVCM KVEEEILEND TILCILYDVH FNRSTQEVRC  420
ECNLFESSGV LCCHCLAVFH YYKVYKVPNQ YVLPRWSKNI KRKHTYVKSS HDVSRSDESH  480
VAFRGLCAHF YNDFVNDDEE TALLHAALEE IRAKLTAHHA KKRSESVADS HNNIGSTSLN  540
VSAVMDIQAP SKVNTKDRLK SKRLGAAMEK SFKKSARRRN KHDPPVVYPE PTQDVRFGGV  600
VGQADPEQVG GFILAEEAGF MG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.P0SZ5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025637408.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445EJZ50.0A0A445EJZ5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-28FAR1-related sequence 6