PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P3BCC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 264aa    MW: 28724.5 Da    PI: 4.4797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P3BCCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-1860109255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Araip.P3BCC  60 LYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALCIKG 109
                  69****887.**********843...6************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.94E-3259119No hitNo description
PfamPF008471.1E-1259109IPR001471AP2/ERF domain
SMARTSM003807.0E-3660123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3160118IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2160118IPR016177DNA-binding domain
PROSITE profilePS5103222.74860117IPR001471AP2/ERF domain
PRINTSPR003671.6E-96172IPR001471AP2/ERF domain
PRINTSPR003671.6E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTLTTSSSSS SSSSETSTTS TISPPPSPSP SSSSSSSKKQ KTEHANKDPK RPRDCSKHPL  60
YHGVRKRNWG KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAALCIKGQ SAILNFPELA  120
GTLPRPVTCS PRDIQAAATA AASMVKFDSI AAAEQPQLHP DTSDDAETCS QQQEAEQSPS  180
SESSSLSMSR ETDSSELSEI VELPNIEDDE GFDSVESSRS EFIWFDMVDN CNGWVYDPPM  240
GLEGAEFCAN FIADSNSLIP IWDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18561171072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.P3BCC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029151500.10.0ethylene-responsive transcription factor ERF036
SwissprotQ9LYD37e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A444XCS80.0A0A444XCS8_ARAHY; Uncharacterized protein
STRINGGLYMA07G02001.16e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]