PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P6WM6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 585aa    MW: 63428.7 Da    PI: 7.6703
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P6WM6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.2e-14158197242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Araip.P6WM6 158 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 197
                  89**************************.********9875 PP
2TCR50.93e-16242281140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Araip.P6WM6 242 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 281
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-17157197IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.003158282IPR005172CRC domain
PfamPF036382.9E-11159194IPR005172CRC domain
SMARTSM011148.4E-20242283IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12245280IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MGEGEGGGVD GGSKTATSSV DAAVTTPVEA PTGKKLARQL DFTALPEKKS QQQLQQRLHS  60
QVQVQQQKQI VAPVIAAQPQ IMAQPSVVVK PVPSPQAPAV KVGTWIVCFL TRVGSWLCEE  120
DFDFSVWGTN ACAMFWKPES PKSRSRPNFD IKEATPKKQK QCNCKHSKCL KLYCECFASG  180
IYCDGCNCVN CFNNVENEAA RREAVEATLE RNPNAFRPKI ASSPHGTRDS REEAGEVLIL  240
GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF EGSEERQALF HGDQNNMTYI  300
QQAANAAITG AIGTSGYSSP PVSKKRKGQE IFVGQTAKEP SVSKLGQQVN HVRSPAPSPS  360
LPSLPGTRVG TATLGPSKFS YRSLLADIIQ PQHLKELCSV LVLLSGQAAK TLTERTAERE  420
DGEGGTGARR CCLFWLGAAQ SNQKNLMEKH TEDQTETSLA SSNQSQLPNQ KEGDVEKAMA  480
DDCSSANQAD KISPDNSSSD GADIPKGRPM SPGTLALMCD EQDTFMTAAS PVGTMAHGCN  540
TSSEFPYGQG MTEVYAEQER IVLTKFRDFL NRVITMGEIN GKLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-321502912132Protein lin-54 homolog
5fd3_B2e-321502912132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.P6WM6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-119AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203719.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_025656071.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-178TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445D3570.0A0A445D357_ARAHY; Uncharacterized protein
STRINGXP_007152845.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-146Tesmin/TSO1-like CXC domain-containing protein