PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P7GZ6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 408aa    MW: 46563.8 Da    PI: 5.4955
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P7GZ6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-071457340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + + ++++fC  ++ +lC+ C    H+       H++v
  Araip.P7GZ6 14 ARACDSCLRVRARWFCAADDAFLCHGCDNLVHSAnqlasrHERV 57
                 578******99*********************657788888876 PP
2CCT675.2e-23350393144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Araip.P7GZ6 350 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 393
                  9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0821259IPR000315B-box-type zinc finger
SMARTSM003366.2E-81259IPR000315B-box-type zinc finger
PfamPF006431.2E-51457IPR000315B-box-type zinc finger
CDDcd000213.12E-71559No hitNo description
PfamPF062039.3E-18350392IPR010402CCT domain
PROSITE profilePS5101715.993350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MKGSSSGALG AKTARACDSC LRVRARWFCA ADDAFLCHGC DNLVHSANQL ASRHERVRLQ  60
TSSSSAKIIT TAWHSGFTRK ARTPRHHNKS TFLMQQQQDA EKEEEAVFNN YHGSVFLDPV  120
VPDLGSEDIY ESEEQILCRV PVFHPFDDDS VLCSVHNNEV VEDEMMKKKK KKMKKMNNDD  180
GEEGEGEVPC TFGLENFSDL ADVENLLHIE DDSTMIKVKD ELQQVTNDDD DCNLESILDW  240
NIDTSDQSMM MAVVEHDQEE EENNNNCSNK VEIIKKEKFL RLNYEEVISA WASQGSPWTT  300
GNPPKFNFDD CWPHYMGSSG GVDNNVEWCH GEEVRNMRWH QIGGVDDGGR EARVSRYREK  360
RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTSSSSSSF VEGAITTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174KKKKKKMKK
2360376RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.P7GZ6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980039e-41BT098003.1 Soybean clone JCVI-FLGm-26B17 unknown mRNA.
GenBankBT0985699e-41BT098569.1 Soybean clone JCVI-FLGm-23A18 unknown mRNA.
GenBankHM0689039e-41HM068903.1 Glycine max CONSTANS-like zinc finger protein (COL21) mRNA, complete cds.
GenBankHM0689059e-41HM068905.1 Glycine max CONSTANS-like zinc finger protein (COL23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203640.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A444Z0E10.0A0A444Z0E1_ARAHY; Uncharacterized protein
STRINGGLYMA07G10161.21e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-79B-box type zinc finger protein with CCT domain