PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.P8FX2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 317aa    MW: 35100.3 Da    PI: 10.1363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.P8FX2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.9e-112374147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
      Araip.P8FX2 23 KQKWTSEEEAALKAGVVKHGVGKWRTILKDPEfsgvlYLRSNVDLKDKWRNL 74
                     79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.96E-162089IPR009057Homeodomain-like
SMARTSM007171.7E-62277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-132274IPR009057Homeodomain-like
PROSITE profilePS500907.4452375IPR017877Myb-like domain
PfamPF002491.9E-72374IPR001005SANT/Myb domain
CDDcd116601.43E-182474No hitNo description
SMARTSM005261.4E-11136201IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.24E-16136215IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.6E-14138207IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.879138206IPR005818Linker histone H1/H5, domain H15
PfamPF005381.5E-7143199IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MIKDKKIESQ ESSSLLLLMG APKQKWTSEE EAALKAGVVK HGVGKWRTIL KDPEFSGVLY  60
LRSNVDLKDK WRNLSVMANG WSSREKSRLA IRRVHQAPKH DENPFAVPPF TPSDEDIVDV  120
KPIQVSREVV PFSGPKRSIV RLDNLIMEAI TTLKETGGSN KTTIAAFIED QYWAPPDFKR  180
LLSAKLKYLT ACGKLIKVKR RYRIAPTPAY SDRRRSSSLL MDGRQKASLR GDKEETNVLT  240
KSQVDLELAK IRSMSAQEAA AVAARAVAEA EAAIAEAEEA AREAETAEAD AEAAQAFADA  300
AMKTLKGRNT PKMMIHA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.P8FX2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086770.0KF208677.1 Arachis hypogaea putative MYB-related protein 23 (MYB23) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197828.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_020976404.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_025646328.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_025646329.10.0telomere repeat-binding factor 1 isoform X1
RefseqXP_029147844.10.0telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK41e-106TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLV5T6Q31e-179V5T6Q3_ARAHY; Putative MYB-related protein 23
STRINGXP_004486503.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-101telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]