PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.P8P9N

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 1822aa MW: 205178 Da PI: 4.9277

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.P8P9N	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	43	98	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+eL++kl L++rq ++WF+ rR k+kk Araip.P8P9N 43 PKRQMKTPYQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKK 98 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-18	28	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-16	29	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	39	99	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	41	103	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	43	98	IPR001356	Homeobox domain
CDD	cd00086	2.73E-13	44	98	No hit	No description
PROSITE profile	PS50827	16.838	560	619	IPR018501	DDT domain
SMART	SM00571	2.5E-20	560	619	IPR018501	DDT domain
Pfam	PF02791	2.2E-17	561	616	IPR018501	DDT domain
Pfam	PF05066	3.8E-15	728	795	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.9E-9	949	992	IPR028942	WHIM1 domain
Pfam	PF15613	5.9E-13	1128	1200	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1822 aa Download sequence Send to blast
MEGEGGSEGE NNQRRGGTDD NSNENINGSN SKVANSNEGQ SKPKRQMKTP YQLETLEKAY 60 ALETYPSEAM RAELSEKLAL SDRQLQMWFC HRRLKDKKDL PTKKPPKKAV EKVREPEPEP 120 VPDSPVDDHR LGPELGNENG SGSGSGSSPF TRSESRSVAP RGYYESQQAA LELRAISCVE 180 AQLGGPLRED GPILGIEFDA LPPDAFGAPL ATIAEQQKRP SHAYDSKVYE RHNARPNKAM 240 ARAFHEYQFL RNQAGPRSDG FGQYPQHHLH DPMEGPARNT HFAHGTEQLH RSHATQGHSS 300 RVRILPQQDK QGIPHPSPPQ DDDVASQKQL HTNVVNTGVN SHSTDYQIVG PENPYNPPGG 360 QVSHITTMQI EKKRKSDDAR SAREVEAHEM RIKKELEKQD NLRRKNEERM RKEMERQDRE 420 RRKEEERLMR ERQREEERLR REQKRELERR EKFLLKENLK AEKMRQKEEL RKEKEAERRK 480 AALEKATARR IAKESMELIE DEQLELMELA ASSKGLSSII HLDFDTLQNL ESFRDSLCVF 540 PPKSVKLRKP FAIQPWINSE ENVGNLLMVW KFLITFADIL ELWPFTLDEF VQAFHDYDSR 600 LLGEIHVALL KVIIKDIADV ARTPSTGLGM SQNGAANSGG GHPEIVEGAY AWGFDIRNWH 660 KHLNQLTWPE IFRQLALAAG YGPQLKKRNI TWSYANDKDE VRGGKGRNYG RRLIYCPPRK 720 SRHRLTPGTV KFAAFHVLSL EGGEGLTVLE LAEKIQKSGL RDLTTSKTPE ASISVALTRD 780 AKLFERIAPS TYRVRTAFRK DPADAESILS EARKKIQIFE NGFLAGEDAD EVEREDDIER 840 DDVERYDDVE REEESESEEV DDDPEVDDLL GPSSANKTSE LCDDFSSIGK ESLGHKVELI 900 QDQFEKDLPE NGTKDVDGSK DAHLPDAITG QPVITNFEED NMEIDESKTG ESWVEGLAEG 960 EYSDLSVEER LNALVVLVGV ANEGNSIRVV LEDRLEAANA LKKQMWAEAQ IDKIRLRDDN 1020 VNKSDFPSIN GNKVEPQYTS PAVGGNQSPL LDINIDNNNN NEASPSTAEN KKAAVVQNLA 1080 MEKPSIGQDY CIGPDNPQTQ LSAPYSKRSR SQLKSYISHM AEEMSVYRSL PLGQDRRHNR 1140 YWQFVASASC NDPGSGRIFV EYLDGNWRLI DSEEAFDALF NSLDLRGIRE SHLRIMLQKI 1200 GSSFKENVRK NAQSANIGSR DESNIKNEAD EAESSPDCHA LSDSPSSTLC GLNSDTSETS 1260 SSFKIELGKS ESEKKGALRR YQDFQKWMWK ECYNSSILSA MKYGKMRCKP QVDICDICLN 1320 PYFFEDSHCN CCHRTFPSNN GFNFSKHIFQ CGGKLSKDIC ILDCSLPLRT RLLKALLAFI 1380 EASVPSEAFQ STWTEDTRRH WGLKLSKSSS VEELLQLLTV FERAIKRDFL SSSFSTTQEL 1440 LGSSSMSESA FTDPESVAVL PWVPQTTSAV SLRLSEFDAS ISYVQLEKSE HRREKETIEY 1500 METFEMNKLR CHLYSCETAE KLPSRSNPFK SSRVVEPADL DHDEFMKVRS APMKIVKSGN 1560 KRGRGNSDKG RGKKIAKRMH DSKQDTGRRI VKVTENLSQR LKQQGQGAQG QSGGRGRRTV 1620 RKRRVEKRAV EDLLLGHKAG THSSNIVREP LRNLDEEWDD DEKASPMTSI HMGAADNSNS 1680 AEEADSDDNA QVAESNDNAQ AADSDDNAQE VDSDDNPLEV DSDDNAQAVD SDDNGQAVEY 1740 DQGNWGIGFN NTPNRWSRDV VGMIDEDVEA SDEDNDNNVG LEENEEEESE GDDVMSEEGS 1800 DGIADRVLND DSDSDDSEDS SD

Sequence ? help Back to Top

Protein Sequence Length: 1822 aa Download sequence Send to blast

MEGEGGSEGE NNQRRGGTDD NSNENINGSN SKVANSNEGQ SKPKRQMKTP YQLETLEKAY  60
ALETYPSEAM RAELSEKLAL SDRQLQMWFC HRRLKDKKDL PTKKPPKKAV EKVREPEPEP  120
VPDSPVDDHR LGPELGNENG SGSGSGSSPF TRSESRSVAP RGYYESQQAA LELRAISCVE  180
AQLGGPLRED GPILGIEFDA LPPDAFGAPL ATIAEQQKRP SHAYDSKVYE RHNARPNKAM  240
ARAFHEYQFL RNQAGPRSDG FGQYPQHHLH DPMEGPARNT HFAHGTEQLH RSHATQGHSS  300
RVRILPQQDK QGIPHPSPPQ DDDVASQKQL HTNVVNTGVN SHSTDYQIVG PENPYNPPGG  360
QVSHITTMQI EKKRKSDDAR SAREVEAHEM RIKKELEKQD NLRRKNEERM RKEMERQDRE  420
RRKEEERLMR ERQREEERLR REQKRELERR EKFLLKENLK AEKMRQKEEL RKEKEAERRK  480
AALEKATARR IAKESMELIE DEQLELMELA ASSKGLSSII HLDFDTLQNL ESFRDSLCVF  540
PPKSVKLRKP FAIQPWINSE ENVGNLLMVW KFLITFADIL ELWPFTLDEF VQAFHDYDSR  600
LLGEIHVALL KVIIKDIADV ARTPSTGLGM SQNGAANSGG GHPEIVEGAY AWGFDIRNWH  660
KHLNQLTWPE IFRQLALAAG YGPQLKKRNI TWSYANDKDE VRGGKGRNYG RRLIYCPPRK  720
SRHRLTPGTV KFAAFHVLSL EGGEGLTVLE LAEKIQKSGL RDLTTSKTPE ASISVALTRD  780
AKLFERIAPS TYRVRTAFRK DPADAESILS EARKKIQIFE NGFLAGEDAD EVEREDDIER  840
DDVERYDDVE REEESESEEV DDDPEVDDLL GPSSANKTSE LCDDFSSIGK ESLGHKVELI  900
QDQFEKDLPE NGTKDVDGSK DAHLPDAITG QPVITNFEED NMEIDESKTG ESWVEGLAEG  960
EYSDLSVEER LNALVVLVGV ANEGNSIRVV LEDRLEAANA LKKQMWAEAQ IDKIRLRDDN  1020
VNKSDFPSIN GNKVEPQYTS PAVGGNQSPL LDINIDNNNN NEASPSTAEN KKAAVVQNLA  1080
MEKPSIGQDY CIGPDNPQTQ LSAPYSKRSR SQLKSYISHM AEEMSVYRSL PLGQDRRHNR  1140
YWQFVASASC NDPGSGRIFV EYLDGNWRLI DSEEAFDALF NSLDLRGIRE SHLRIMLQKI  1200
GSSFKENVRK NAQSANIGSR DESNIKNEAD EAESSPDCHA LSDSPSSTLC GLNSDTSETS  1260
SSFKIELGKS ESEKKGALRR YQDFQKWMWK ECYNSSILSA MKYGKMRCKP QVDICDICLN  1320
PYFFEDSHCN CCHRTFPSNN GFNFSKHIFQ CGGKLSKDIC ILDCSLPLRT RLLKALLAFI  1380
EASVPSEAFQ STWTEDTRRH WGLKLSKSSS VEELLQLLTV FERAIKRDFL SSSFSTTQEL  1440
LGSSSMSESA FTDPESVAVL PWVPQTTSAV SLRLSEFDAS ISYVQLEKSE HRREKETIEY  1500
METFEMNKLR CHLYSCETAE KLPSRSNPFK SSRVVEPADL DHDEFMKVRS APMKIVKSGN  1560
KRGRGNSDKG RGKKIAKRMH DSKQDTGRRI VKVTENLSQR LKQQGQGAQG QSGGRGRRTV  1620
RKRRVEKRAV EDLLLGHKAG THSSNIVREP LRNLDEEWDD DEKASPMTSI HMGAADNSNS  1680
AEEADSDDNA QVAESNDNAQ AADSDDNAQE VDSDDNPLEV DSDDNAQAVD SDDNGQAVEY  1740
DQGNWGIGFN NTPNRWSRDV VGMIDEDVEA SDEDNDNNVG LEENEEEESE GDDVMSEEGS  1800
DGIADRVLND DSDSDDSEDS SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	98	RRLKDKKD
2	96	107	KKDLPTKKPPKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.P8P9N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020973077.1	0.0	homeobox-DDT domain protein RLT1
TrEMBL	A0A444ZWL0	0.0	A0A444ZWL0_ARAHY; Uncharacterized protein
STRING	GLYMA13G24370.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator