PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PA8JR

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 586aa MW: 67138.1 Da PI: 9.3688

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PA8JR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.2	6.2e-19	131	220	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngei...tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk+vGF +r+++++ k+ +ei +++ Cs+eg+re++ k+ + r + t gCka++ v +++ +++w vtklel+H+H++ Araip.PA8JR 131 EFYSNYAKKVGFVTRIRNTNFDKTRKEIkvpINQSIHCSREGYRESRVKA---AMRVKRITTAGCKARMYVMLDRhNDNWLVTKLELKHTHAC 220 6*************999988666665333799*********999...888899999*******999*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-16	131	221	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	368	404	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MVNVDQVNLK PEKLNIPTLS HNLFSKKPSP NVSRTIGQIF QSPGRRRAQS ASVRLSSRFQ 60 LDTPTASWKI DATCVHGGFV KSLCRELYQG KESEDAIQKK DDATVPDHTG IPMEEIPYVG 120 LRFNSLQRAQ EFYSNYAKKV GFVTRIRNTN FDKTRKEIKV PINQSIHCSR EGYRESRVKA 180 AMRVKRITTA GCKARMYVML DRHNDNWLVT KLELKHTHAC SAEQAVHYSL YEDRRMWVPI 240 YFQGEFWAGM RSTQRSESMH AFFGGYLHCK SGLVQFVHEY DNVLGNKEQK ELEDDAADSK 300 GVVPCSSSST IERQFQREYT TSKFREVQHE FSKRGDCIVR GVTQEGDLFR VTVNEQYLLY 360 GEPRSWKYSV EFDPKTHKIR CECNMFGSRC IICCHCLAVL FYYGVDTVPS CYVIHRWSKN 420 VQRKHTFIKS SHDEKRSDES HNLFRRLCSH FYNVAQDFLT CEEEAAMLHS GLDQLRSKLL 480 DCRVNLLSGR VPSSQNSTVT QGGPHLGESD IQGPSKVSTK GRPRMKRLGS ELDASIKNSM 540 RRKKKNPPLD VHEALNQDVA GCSARRANES QEHGGFLSLL NSFRPT

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MVNVDQVNLK PEKLNIPTLS HNLFSKKPSP NVSRTIGQIF QSPGRRRAQS ASVRLSSRFQ  60
LDTPTASWKI DATCVHGGFV KSLCRELYQG KESEDAIQKK DDATVPDHTG IPMEEIPYVG  120
LRFNSLQRAQ EFYSNYAKKV GFVTRIRNTN FDKTRKEIKV PINQSIHCSR EGYRESRVKA  180
AMRVKRITTA GCKARMYVML DRHNDNWLVT KLELKHTHAC SAEQAVHYSL YEDRRMWVPI  240
YFQGEFWAGM RSTQRSESMH AFFGGYLHCK SGLVQFVHEY DNVLGNKEQK ELEDDAADSK  300
GVVPCSSSST IERQFQREYT TSKFREVQHE FSKRGDCIVR GVTQEGDLFR VTVNEQYLLY  360
GEPRSWKYSV EFDPKTHKIR CECNMFGSRC IICCHCLAVL FYYGVDTVPS CYVIHRWSKN  420
VQRKHTFIKS SHDEKRSDES HNLFRRLCSH FYNVAQDFLT CEEEAAMLHS GLDQLRSKLL  480
DCRVNLLSGR VPSSQNSTVT QGGPHLGESD IQGPSKVSTK GRPRMKRLGS ELDASIKNSM  540
RRKKKNPPLD VHEALNQDVA GCSARRANES QEHGGFLSLL NSFRPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PA8JR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020966945.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444XWA0	0.0	A0A444XWA0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17996	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-27	FAR1-related sequence 5