PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PB2Q2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 375aa    MW: 40982.3 Da    PI: 7.5284
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PB2Q2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.73.3e-4064124262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s
  Araip.PB2Q2  64 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKLS 124
                  6899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2664118IPR003851Zinc finger, Dof-type
PfamPF027019.9E-3465122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.18968122IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAFSSLHICM DSPDHWFQGT VHDEVSGGSG SGGMDSSGSP LSSSGDIMKC SARPMMERRM  60
RPPHDQALKC PRCDSTHTKF CYYNNYSLSQ PRYFCKTCRR YWTKGGTLRN IPVGGGCRKN  120
KKLSSNSKKH HQSNNNNNND LHTSHNNNQS HSYSTCPKDL QLSFPDVQFS HLSNIILGGN  180
VNPNNSSFME SKFHVGMLEN NLVRPIDFME NKLEGIIGSG INSSRSFDFF GNNNSNGGCD  240
ENSNNNINMM MLGMANNVGL GPNNFHALNC SPIASFGGMS SLNGGGCGNS SVNNIGNSYI  300
MDSSSSCHQR MMLTYDDDNN NATIDVKPNP KLLSLEWQDH GCSDAGKDSF GYLHSHGSWS  360
GMINGYGSST TNPLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PB2Q2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025683860.10.0dof zinc finger protein DOF5.6 isoform X1
TrEMBLA0A444X7S40.0A0A444X7S4_ARAHY; Uncharacterized protein
STRINGGLYMA04G35650.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.13e-33Dof family protein