PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PBJ1N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 180aa    MW: 20443.8 Da    PI: 4.4119
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PBJ1NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.2e-1893173283
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                  fY+ YAk+ GF v k+k  ++ rn+ it+++fvC ++g+re  + + +  r+++aetr+gC+a+++v++++ +g+w ++ +++
  Araip.PBJ1N  93 FYSLYAKMNGFAVGKNKIWQNVRNE-ITQQEFVCFRQGFREMGSIN-DGIREPKAETRCGCEAEMRVHMHSkSGRWIISYFQT 173
                  9*******************97776.****************9999.99********************999******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1693173IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEGESVVDEC YRPLFAEEEG GDGSDAFGPG GDKFGEEVED GELGENFADS FFDNWEERAV  60
DGIAELGCIN FKEITAKEIM MCHFPDRSVA FLFYSLYAKM NGFAVGKNKI WQNVRNEITQ  120
QEFVCFRQGF REMGSINDGI REPKAETRCG CEAEMRVHMH SKSGRWIISY FQTQPRVAGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PBJ1N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016195840.11e-108protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZKC01e-106A0A444ZKC0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-10FAR1-related sequence 5