PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PF4SQ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 132aa MW: 15258.8 Da PI: 10.7707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PF4SQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.1	2.8e-08	16	87	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YAk+vGF ++++ +++ + ++g++++++ + ++t+ t+ +C a++ ++++k+g ++k+ l+H+H++ Araip.PF4SQ 16 NYAKRVGFVTKIRFTRRVGK------------NKGRKRKSR--VSPIEKTNLRTNYNCPARISIRLNKEGLSIISKVCLDHSHPCD 87 56666666666665555422............223333333..3478899*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-5	18	87	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MELVLEEQNI EDVPKNYAKR VGFVTKIRFT RRVGKNKGRK RKSRVSPIEK TNLRTNYNCP 60 ARISIRLNKE GLSIISKVCL DHSHPCDPEM AKLLTRNRKM TMHMCRVIER NDEAGVRTSK 120 TYQVLVGEAG FL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PF4SQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015938509.1	2e-72	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445BZC7	5e-71	A0A445BZC7_ARAHY; Uncharacterized protein
TrEMBL	A0A445ETK8	2e-72	A0A445ETK8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477