PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PH7X0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 334aa    MW: 37289.6 Da    PI: 6.9132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PH7X0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g+W++ ++  g++R++k+c++rw +yl
      Araip.PH7X0 15 KGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.46.8e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++l++++++ lG++ W++Ia++++ gRt++++k++w+++l
      Araip.PH7X0  68 RGKFSDEEEQLIINLHAVLGNK-WAAIASHLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.371062IPR017930Myb domain
SuperFamilySSF466898.8E-3212109IPR009057Homeodomain-like
SMARTSM007173.0E-151464IPR001005SANT/Myb domain
PfamPF002498.6E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-251669IPR009057Homeodomain-like
CDDcd001676.11E-121762No hitNo description
PROSITE profilePS5129427.54563117IPR017930Myb domain
SMARTSM007171.3E-1767115IPR001005SANT/Myb domain
PfamPF002498.7E-1768113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2870117IPR009057Homeodomain-like
CDDcd001673.81E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMGRTGSSDE SGLKKGPWTP EEDKILVDYI QRHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSDEEEQLII NLHAVLGNKW AAIASHLPGR TDNEIKNFWN THLKKKLLQM  120
GLDPMTHRPR TDHLNLLTNL QHILAAANIV TTFTNPNHQI NTALSLQNML QPMPPAPSNL  180
LNNLGSSFSS LSLPDTLLYE GLGLNVNDHS TLHNIIYNAS NSAASSSQNQ FQNFDQQQMM  240
MTMMNGSRNN NNSSNCSESQ NFDEQFGSTN ATTTVTPSSS LPNLVSVSAS PERSSSSPTK  300
NNNNNIINSN STFEIWGDFM DVDPNDAYWK DFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PH7X0
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-78AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200700.10.0transcription factor MYB74
RefseqXP_025654010.10.0transcription factor MYB41
SwissprotQ9S9Z22e-82MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A444Z7T70.0A0A444Z7T7_ARAHY; Uncharacterized protein
STRINGGLYMA01G44370.21e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-85myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]