PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PJS9A

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 115aa MW: 12514.2 Da PI: 8.5018

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PJS9A	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.3	2e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+il++m+vkgLtl+h+kSHLQkYRl Araip.PJS9A 40 KPRLRWTTDLHERFVDAVTQLGGATKATPKAILRTMNVKGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-33	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	37	97	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.6E-25	40	95	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.15E-17	40	96	IPR009057	Homeodomain-like
Pfam	PF00249	7.8E-9	42	93	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MFSRLIHPRD GGGDGDGVEE MMVQGGGGGE PSLVLTSDPK PRLRWTTDLH ERFVDAVTQL 60 GGATKATPKA ILRTMNVKGL TLYHLKSHLQ KYRLGKQSGK DFDEGCKDGG FINTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PJS9A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177138.1	9e-68	protein PHR1-LIKE 2 isoform X1
Refseq	XP_016177139.1	9e-68	protein PHR1-LIKE 2 isoform X2
Refseq	XP_025677289.1	9e-68	protein PHR1-LIKE 2 isoform X1
Refseq	XP_025677290.1	9e-68	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	2e-39	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A444XRI1	2e-66	A0A444XRI1_ARAHY; Uncharacterized protein
STRING	GLYMA20G33540.2	1e-51	(Glycine max)
STRING	XP_007144235.1	2e-52	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-40	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]