PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PK713

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 199aa MW: 22616.4 Da PI: 8.061

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PK713	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	95	1.5e-29	21	82	3	64
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 + +++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstWvp+++rr+r +++ + ++ Araip.PK713 21 QSSTKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHIKSTWVPVDRRRHREVNNHFQLHHPH 82 56789*********************************************877766555444 PP
2	DUF702	61.6	3e-19	98	151	100	153
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ +lP+ +s+a+fr+v v+s+d + +e++Yqt v+igGhvf+G+Lyd+G++ Araip.PK713 98 EDKLKLPSATNSMAIFRRVEVRSMDHAVNEIGYQTCVNIGGHVFSGLLYDHGPA 151 45667***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-41	23	151	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-25	25	67	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-16	103	150	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MPTATNSIEK EEEETGIKGD QSSTKCQDCG NQAKKECSYW RCRTCCKNKG FHCQTHIKST 60 WVPVDRRRHR EVNNHFQLHH PHISKKHKHF YSPSPGVEDK LKLPSATNSM AIFRRVEVRS 120 MDHAVNEIGY QTCVNIGGHV FSGLLYDHGP AAPFLDHHHQ QNLNHGASMG PVDDVDEPFL 180 PPPPLSDPLR TPYFSFPKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PK713

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016165826.1	1e-150	protein SHI RELATED SEQUENCE 3-like
Refseq	XP_025667616.1	1e-150	protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A445CDW9	1e-142	A0A445CDW9_ARAHY; Uncharacterized protein
STRING	GLYMA06G01160.2	1e-52	(Glycine max)
STRING	GLYMA12G04310.1	3e-52	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	6e-40	SHI-related sequence3