PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PQ54V

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 284aa MW: 32621.7 Da PI: 8.0855

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PQ54V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.7	7.5e-22	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Araip.PQ54V 90 RQRWTPTPLQLQILERIFDQgNGTPSKEKIKEITAELshhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	101.9	4.5e-33	89	151	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++k Araip.PQ54V 89 SRQRWTPTPLQLQILERIFDQGNGTPSKEKIKEITAELSHHGQISETNVYNWFQNRRARSKRK 151 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-17	85	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.321	86	151	IPR001356	Homeobox domain
SMART	SM00389	1.2E-14	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-19	88	153	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-19	90	150	IPR001356	Homeobox domain
CDD	cd00086	1.79E-13	90	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MVVKMIEWQK QLQNNEKADR TNNNMMFVKV MTDEQLETLR KQIAVYATLC DQLVEMHRTL 60 STHHDLTGVR VGNIYCDSLM TSAGQKITSR QRWTPTPLQL QILERIFDQG NGTPSKEKIK 120 EITAELSHHG QISETNVYNW FQNRRARSKR KLQNNVPPTT IESEVDAEVD SKDKKTRPEE 180 LIGSQQQQHS TIIMTNASAT NRPEKLCFQN PELQYLNNQH PNKNNKSDPI FTSDGTLRPL 240 RNFSRMPVFD DVLSNSRGDY LDGKMEVGGM YNLYQQGGDY NLGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PQ54V

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM502259	0.0	KM502259.1 Arachis hypogaea wuschel-related homeobox 13A (WOX13A) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016176952.1	0.0	WUSCHEL-related homeobox 13 isoform X3
Refseq	XP_020966581.1	0.0	WUSCHEL-related homeobox 13 isoform X3
Refseq	XP_025677316.1	0.0	WUSCHEL-related homeobox 13 isoform X2
Refseq	XP_025677317.1	0.0	WUSCHEL-related homeobox 13 isoform X2
Swissprot	O81788	1e-78	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A444XU75	0.0	A0A444XU75_ARAHY; Uncharacterized protein
STRING	GLYMA10G43580.2	1e-125	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-81	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]