PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PT0VL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 605aa    MW: 68335.9 Da    PI: 10.1151
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PT0VLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1576.6e-181197191
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+ +   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.PT0VL 11 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNLTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97
                 6****************98887..8889*************998877...89999*************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-151197IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.285392428IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4393425IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4403430IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MTFTTLEDAG KFYRNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
LTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIHRTIENN  120
EEADLYEDRH IWVPIYLDHH FWAGMRSTQR SESKHSQPSS PPSSPRSQVV SATAVAWSSA  180
PVALHRRLVP SLVALHRLHL LNTSSPLIVF IVAWSSTPVA FHRPQHSQPS SPPSSPRSQV  240
VSATAVAWSS APVALHRRLV PSLVALHRLH LLNTSSPLIV FIVAWSSTPV ALHRTQNISL  300
IQFVKQYDNC LGSREQVERE SDAADFHTTI PCATKSSIEA QFQDVYTHQK FREVQAQFRG  360
KANRITRLTN SALGYSVYEV GEQVSSSIFN KFVVTYDLVA AEVKCQCLLF ESRGILCRHA  420
LSVLSFEQVS QVSPRYILER WCKKVKRRHT HIKSSHDEPL LEPRSKRFDQ LVFRSQNICE  480
FASESEELTA ILHRAYDNVM VEMESLKAKR KGTSSLSHED ANLESVNELQ SPPRIRTRGH  540
PKDRLGSKLD KQIANATKKK KTKALNELNL FDDASVVHSN SSQYQVRIMN YQFRVPAAVD  600
NSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PT0VL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444YTA40.0A0A444YTA4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.13e-19FAR1-related sequence 4