PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PT3JP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 225aa    MW: 26297.5 Da    PI: 9.5609
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PT3JPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.63.1e-11148225279
         FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                  +Y +YA ++GF v+++++  +  + ++ ++++ ++C++ g+ +++ k+    +r++++  t+Ck ++ + ++k  g+w+++
  Araip.PT3JP 148 YYYRYAARTGFVVKIRTTGWEtrNGQRVVINQALYCNRDGYCTSRVKA---PKRRKTVASTNCKVHFYLALDKmIGQWRIS 225
                  8************99887666224455799***************999...778888999***********9999***995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-9148225IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLIAKCLFFP SPKATVSDIH IRAAIDVSNP RKIYWVRYIY GFLIEGVLRF QDVGKKTVDG  60
WMFALLIIYL HANKNGDLGR YNGREPWIKD WSLADLKKMD EEESTSHLSF ICFFLLFFFQ  120
VINQVIGDEE LEHKEGMCFS ILEDARAYYY RYAARTGFVV KIRTTGWETR NGQRVVINQA  180
LYCNRDGYCT SRVKAPKRRK TVASTNCKVH FYLALDKMIG QWRIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193199KAPKRRK
2195201PKRRKTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PT3JP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-