PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PU48P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 838aa    MW: 92220 Da    PI: 5.7769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PU48PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22656752295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+++gr+vlpkk ae+h  +++ + ++t+t+ed  ++r+W+++++y  ++ks++y+l+ ++ +FvkangL+egDf+v++  ++ ++++++
  Araip.PU48P 656 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGITITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIY--SDvKCGKFM 750
                  79*************************99999*********7778*********777777777777.********************..555899777 PP

                  EE CS
           B3  94 vk 95 
                  ++
  Araip.PU48P 751 IR 752
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-30648763IPR015300DNA-binding pseudobarrel domain
CDDcd100158.58E-37653754No hitNo description
SuperFamilySSF1019362.75E-24654751IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-23655755IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42655757IPR003340B3 DNA binding domain
PfamPF023629.7E-19656752IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
PSQRSSFVGV QGLDLHARVA KTETVDPILG FGAMDHHHHN NHNHHDAEIY ADADDADKDL  60
WLNTTTEQED LLVGDVKTDA SMFYDEFPPL PDFPCMSSSS SSSSTPTLPL KNLACSTTST  120
TTATAATSSS SSSASSWAVL KPEAEDNNNG EWNCSNKQQL YMQHHDPLDA TGALSSTASM  180
EISQPKFPDQ GGFDGVVGDV DCMDDVMDTF GYMELLEANE FFDPSSIFQG EENPLAEFTQ  240
EDQVLPQQEE QQQQEKPAVV HNQNDLIVLR PQQEAVVEGV SNNNYQQLLG LWEASNNNDA  300
EIQGDGGGGG AIADDEMSMV FLEWLKSNKD SVSASDLRSV KLKKSTIESA AMRLGGGKEA  360
MKQLLKLILE WVQTSHLQSR RRKENNNDNT VANPFTEQFQ NPIHQNNPNA SSSFAIEPNT  420
CFTQHQPWMD QVPLMAAAPP SQSQPQPQFQ QPTIGYVGDP YTNGASANTI NGSNNFQAGN  480
EYHMLESANS WPPSQYTVTP YYTQPFGDHS FQPPAAGGFG NQYPYQFFHG PGDGLIRLGP  540
SATKEARKKR MARQRRLSSH SRHHINLQSQ GSDPNTRLGV GGENCTGVVS AAPANWVYWP  600
TMAGAVASVA PVAPAEPSAV VDKPAMQTQN YHHQGRLSSD RRQGWKSEKN LRFLLQKVLK  660
QSDVGSLGRI VLPKKEAETH LPELEARDGI TITMEDIGTS RVWNMRYRYW PNNKSRMYLL  720
ENTGDFVKAN GLQEGDFIVI YSDVKCGKFM IRGVKVRQQE GAKAEGKKTG KSHKNQHGNN  780
AVPTAGEPHT NATSSSTHQE NEKSINNNII LCSRIKGTTL NTMHIISSVF LHGRTKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-396517601110B3 domain-containing transcription factor FUS3
6j9b_D4e-396517601110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PU48P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016198322.10.0B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLA0A444ZN170.0A0A444ZN17_ARAHY; Uncharacterized protein
STRINGGLYMA08G47240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-126B3 family protein