PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.PUB53

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 459aa MW: 47211.7 Da PI: 8.6411

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.PUB53	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.7	3.7e-65	219	383	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaes 96 gt++CqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaa+rrerq + ++ s+aaa a +++ +k++r s+++++ s+t++s++++ Araip.PUB53 219 GGTTTCQDCGNQAKKDCAHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLITGTTPSTAAAVAgssgSTSGAKKPRL-ISSQTTTNSHTSTSNTTP 315 5789********************************************99888877777666655555666666765.5888899999**** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++t s lP +++++avf+cvrv+svdd+++e+aYq++v+igG vfkG+LydqG ++ Araip.PUB53 316 PRSFDTYSshqdasfkekLPGQIRAPAVFKCVRVTSVDDEQDEYAYQAVVKIGGRVFKGFLYDQGHQN 383 *99999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.4E-62	221	382	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.8E-27	223	265	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-26	334	380	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
RERERGLSVV ATTRRLPSDS GAFADWSAPS SSARVAAPVD DLSLGFNAGP PTTAGPTAAA 60 PQGMWPSRSL NYGLAPPDMP PGMVGLRDVF VVAPASSFHH HHHHHNDAVL SSSDLHHLSN 120 NSSNNPATAL GVGVGVGVIP LLTATPCLDQ DNILTGRART AASGGTTGGG IQFWQEQQPH 180 HHQYLKKQGF IDHNIGANLV PGGGSGSGSG DGGASNSGGG TTTCQDCGNQ AKKDCAHRRC 240 RTCCKSRGFD CPTHVKSTWV PAARRRERQL ITGTTPSTAA AVAGSSGSTS GAKKPRLISS 300 QTTTNSHTST SNTTPPRSFD TYSSHQDASF KEKLPGQIRA PAVFKCVRVT SVDDEQDEYA 360 YQAVVKIGGR VFKGFLYDQG HQNHSNRDSN NSNNNVYPNL SELHLGGGGG GGSGGGGRNG 420 VSSSSPMLDP SDVYAASGGG GGGGVGGLLG GSTYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

RERERGLSVV ATTRRLPSDS GAFADWSAPS SSARVAAPVD DLSLGFNAGP PTTAGPTAAA  60
PQGMWPSRSL NYGLAPPDMP PGMVGLRDVF VVAPASSFHH HHHHHNDAVL SSSDLHHLSN  120
NSSNNPATAL GVGVGVGVIP LLTATPCLDQ DNILTGRART AASGGTTGGG IQFWQEQQPH  180
HHQYLKKQGF IDHNIGANLV PGGGSGSGSG DGGASNSGGG TTTCQDCGNQ AKKDCAHRRC  240
RTCCKSRGFD CPTHVKSTWV PAARRRERQL ITGTTPSTAA AVAGSSGSTS GAKKPRLISS  300
QTTTNSHTST SNTTPPRSFD TYSSHQDASF KEKLPGQIRA PAVFKCVRVT SVDDEQDEYA  360
YQAVVKIGGR VFKGFLYDQG HQNHSNRDSN NSNNNVYPNL SELHLGGGGG GGSGGGGRNG  420
VSSSSPMLDP SDVYAASGGG GGGGVGGLLG GSTYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.PUB53

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016166756.2	0.0	protein LATERAL ROOT PRIMORDIUM 1, partial
Swissprot	Q94CK9	4e-80	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A444YEK4	0.0	A0A444YEK4_ARAHY; Uncharacterized protein
STRING	XP_010269431.1	1e-129	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-55	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]