PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PUS3S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 238aa    MW: 26770.9 Da    PI: 6.2516
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PUS3SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.7e-1161103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E++l +d++ ++G++    Iar+++ gRt++++k+++++++
      Araip.PUS3S  61 RGKLTPFEEKLVLDLHSKWGNR----IARKLP-GRTDNEIKNYFRTHM 103
                      78999***************99....******.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1741108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-54154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-1655106IPR009057Homeodomain-like
PROSITE profilePS5129417.93456107IPR017930Myb domain
SMARTSM007174.7E-760105IPR001005SANT/Myb domain
PfamPF002491.2E-861102IPR001005SANT/Myb domain
CDDcd001679.46E-768103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDGAGGLEVS FICGAVWRQE MGLYSKGFRF EGGGRHLIGL NRTGKSCRLR WVNYLHPGLK  60
RGKLTPFEEK LVLDLHSKWG NRIARKLPGR TDNEIKNYFR THMRKKAQEE KRALASPSSS  120
SCHSSLSSNN NNNQAVDSHA SKKAGEESFY DTGGPVMTVD CSTDLKEEEG FSMDDIWKDI  180
ELCEEKNIVV YDGNKSEEGC NFSSPPSWEY SSDPLWVMDE QSVLFPTSDP YFSSFLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-132910749128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PUS3S
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086690.0KF208669.1 UNVERIFIED: Arachis hypogaea putative MYB-related protein 15-like (MYB15) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016170678.11e-160transcription factor MYB48 isoform X3
RefseqXP_025671647.11e-160transcription factor MYB48 isoform X3
SwissprotQ9LX824e-55MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A445BVL91e-138A0A445BVL9_ARAHY; Uncharacterized protein
STRINGGLYMA15G04620.18e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.43e-66myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]