PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PVK8S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 500aa    MW: 57277.4 Da    PI: 9.8912
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PVK8SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.8e-1738124191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t++    +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.PVK8S  38 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISL---TEKTNPIAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 124
                  6***************998776..8889**************99887...899***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-1538124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGVFTVLTRC IVQPLSVVDD ELVPKVGMTF TTLEDAEKFY RNYAKAAGFS TRVRCTNRKG  60
NEIKNQLITC SREGKWKSKI SLTEKTNPIA GLNCPARIYI HTLKDVGAWI ISKVVLDHSH  120
PCCPSKAEML KQHRELSMSI RRTIENNEEA DLYEHRHIWV PIYLDHHFWA GMRSTQRSES  180
MHSFFNKYIT RNSLLIQFVK QYDNCLGSRE QAERESDAAD FHTVIPCATK SSIEAQFQDA  240
YTHAKFREVQ AQLRGKTNCI TRLKNSALGY SVYEVGEQVS SSIFNKFVVT YDSVVAKVKY  300
QSLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS  360
KRFDQLVFRS QNICEFASKS EELTAILHRA YDNVMVEMES LKAKRKGTSS LSHEDANLES  420
VNELQSPPRI RTRGRPKNRL GSKLDKQIAN TTKKKKTKVL SEINLFDAAS AVHSNFSQYQ  480
AHVINYQFRV PAAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PVK8S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-31FAR1 family protein