PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PZ2NZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 298aa    MW: 33378 Da    PI: 8.0312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PZ2NZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde+l++++ ++G+g +W + ++++g++R++k+c++rw++yl
      Araip.PZ2NZ 14 RGPWSPEEDEKLKNYIDKYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding249.1e-0875972346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia+ ++ gRt++++k++w++
      Araip.PZ2NZ 75 RWSIIASQLP-GRTDNDIKNYWNT 97
                     4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21568IPR009057Homeodomain-like
PROSITE profilePS5129422.036966IPR017930Myb domain
SMARTSM007172.3E-131364IPR001005SANT/Myb domain
PfamPF002492.1E-161462IPR001005SANT/Myb domain
SuperFamilySSF466893.72E-2414100IPR009057Homeodomain-like
CDDcd001671.35E-91662No hitNo description
SMARTSM007173.766101IPR001005SANT/Myb domain
PfamPF002491.2E-57597IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-1175105IPR009057Homeodomain-like
PROSITE profilePS500906.2497599IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDEKLKNYID KYGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHVF MCMYRWSIIA SQLPGRTDND IKNYWNTKLK KKMMAIHDNN NNNLLSSSIL  120
QRKPPTPPHH EQVTLLSMLQ NNPTSSSFIS HHGPADGSSY SSSYSSSLLS SGGNNSSTSN  180
SNFQGQESNL MGHSMFVFGG EATANSCSSS DASCSNNNNN NHVIEHDHHH HGTFVDLYNN  240
NNNNGGILWG ENPLVEDYGI VEEIKELTAT TTTTSTTNCN NNFLLAEKKT DERVMYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-16141037108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PZ2NZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207878.11e-147transcription factor RAX2
RefseqXP_025657531.11e-147transcription factor RAX2
TrEMBLA0A444YNP91e-145A0A444YNP9_ARAHY; Uncharacterized protein
STRINGGLYMA19G36830.12e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-63myb domain protein 36