PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Q49T6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 517aa    MW: 58441.2 Da    PI: 8.1298
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Q49T6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22.1e-21100189391
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  Y +YAk +GF vrk  s k  ++g+i+++ f+C+++g re+++ +  +++r++++etrt+C+akl++ +ek   kw+ ++l++eHnHelap
  Araip.Q49T6 100 YVAYAKGIGFAVRKGDSIKD-KEGNIVRKFFYCNRQGLREKKHYErVDRKRTHKPETRTNCNAKLVMFLEKsCRKWRTKTLVEEHNHELAP 189
                  99***************998.6677***************999885677788999***********9999989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-19100189IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.668319355IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-4330357IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MMAARQSCQV IGLMVGAPIR EMGNDLNGLE EPLTEEGDSG HSDSEYDGRD GGGSYMHAAA  60
EDHANSENVM GKQFSCPDPV IAFVLLSAEF NGIEDAYASY VAYAKGIGFA VRKGDSIKDK  120
EGNIVRKFFY CNRQGLREKK HYERVDRKRT HKPETRTNCN AKLVMFLEKS CRKWRTKTLV  180
EEHNHELAPQ EFTNVMAPHR KIPEGHKAHI HSMHDAGFKT TQIMGFFAHM CVENLDRVVK  240
DYRNNEFIAD YKTLYSNPVL TTGLEALERS VSKFYTREIF YEVQKQIEGV GPLLVLHRDS  300
IGGTEKFMFR KYRKPHHVDS VFVDRSCDKY ECSCKLWERL GIPCCHIFCV LKELEKEELP  360
SRLVLRRWCK DAKVADSSSQ HASVNPTDGF RVRYGALWSA CLSLCFTAAQ CTETYNTAMT  420
EVARMSREFE SLGDIGQRSS RVQVGADETH ILDPKVIRSK GAPRGSTNAN NGRHCRRCLG  480
LGHDRRNCTA MDDDVVDEGG GSGCRPVYTS GKRSQRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Q49T6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020964757.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A445AIV50.0A0A445AIV5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1663528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-17FAR1-related sequence 5