PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Q7CA9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 204aa    MW: 23856.4 Da    PI: 10.3937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Q7CA9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63.1e-101264353
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-S....TCHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKl....sKaeiLekAveYIks 53
                 ++h+++E+rRRdriN  +  Lr+l+Pk +   ++ Kl    +Ka+ L  ++e +k+
  Araip.Q7CA9 12 KSHSQAEKRRRDRINAQLTSLRKLIPKsD---KCNKLilhmDKAALLGSVIEQVKD 64
                 79*************************65...665543333666666666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-81268No hitNo description
PfamPF000102.3E-81265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-121268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-61571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF557242.56E-16102202IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
PfamPF017898.9E-13103203IPR002683PsbP family
Gene3DG3DSA:3.40.1000.102.1E-10142203IPR016123Mog1/PsbP, alpha/beta/alpha sandwich
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015979Biological Processphotosynthesis
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0019898Cellular Componentextrinsic component of membrane
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVAGDRAVSA SKSHSQAEKR RRDRINAQLT SLRKLIPKSD KCNKLILHMD KAALLGSVIE  60
QVKDLKRKAI EVSKVSTESD KIVKGREINL KVVASKRLLY YEFDFRAHDS AFKDRYLQFQ  120
NVRVRFIPTE KKDIRDIYAA PNQRPTIYDM HEKTVDEKYY YSFEYVLTSP NYLSASFATI  180
AIGNGRYWPL IVGANERRWK RYRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Q7CA9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988978e-49BT098897.1 Soybean clone JCVI-FLGm-13O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942388.16e-61photosynthetic NDH subunit of lumenal location 1, chloroplastic
RefseqXP_025620940.16e-61photosynthetic NDH subunit of lumenal location 1, chloroplastic
TrEMBLA0A445BDW71e-59A0A445BDW7_ARAHY; Uncharacterized protein
STRINGGLYMA20G23100.14e-57(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-20bHLH family protein