PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Q9PST
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 117aa    MW: 13154.5 Da    PI: 10.4003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Q9PSTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.6e-1423115397
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  k l++s   +++ +v+p +fae+   +  ++  + +  e+g  +++ l+++kk++   +lt+GW  F+k ng ++g ++ F+   ++e +l+vk++
  Araip.Q9PST  23 K-LLTSTQVQNSAVVIPLRFAESAFPS--RHNHVNMILENGSCYQMGLRWSKKRKVqLYLTRGWMTFAKYNGFRAGTILEFSILPSDEITLHVKIL 115
                  4.45666666667********999644..4456888888899999999995555555*************************77668888999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-1420114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.99720117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-1421115IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.002721117IPR003340B3 DNA binding domain
CDDcd100173.58E-1123116No hitNo description
PfamPF023623.6E-1123115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSLLISSDPG TAIQGAQLLT CLKLLTSTQV QNSAVVIPLR FAESAFPSRH NHVNMILENG  60
SCYQMGLRWS KKRKVQLYLT RGWMTFAKYN GFRAGTILEF SILPSDEITL HVKILKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Q9PST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989996.11e-69uncharacterized protein LOC110277091
TrEMBLA0A445BVX32e-52A0A445BVX3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2396823