PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QDS9P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 166aa    MW: 18252.7 Da    PI: 9.9131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QDS9PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005494115223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ Cg +F+r+++  rH+  H
  Araip.QDS9P  94 QCTSCGLRFKRQDEHSRHMDWH 115
                  7******************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-494118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQGQSLHLHG GTLPPLHPSL PTAPSQMMSH PHADASVTSQ PPPAYLNLIS SLVNHGVISV  60
TNPPTNPPTV LDFIGMEFDP DILKVALYGD LPKQCTSCGL RFKRQDEHSR HMDWHVTRNR  120
MSKSRKQKGS QKWFASGSMW LSGVEASGKE SIPGFVGSRG YRGNER
Functional Description ? help Back to Top
Source Description
UniProtPromotes flowering by suppressing FLC-mediated inhibition of flowering through the regulation of FCA pre-mRNA alternative processing (PubMed:18298670). Regulates mRNA maturation including alternative polyadenylation, splicing or transcription initiation of stress-associated genes (PubMed:21364912). {ECO:0000269|PubMed:18298670, ECO:0000269|PubMed:21364912}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QDS9P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029148746.17e-97polyadenylation and cleavage factor homolog 4-like
SwissprotQ0WPF22e-40PCFS4_ARATH; Polyadenylation and cleavage factor homolog 4
TrEMBLA0A444Z7E76e-95A0A444Z7E7_ARAHY; Uncharacterized protein
STRINGXP_004489376.11e-55(Cicer arietinum)
Publications ? help Back to Top
  1. Hunt AG, et al.
    Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling.
    BMC Genomics, 2008. 9: p. 220
    [PMID:18479511]
  2. Zhao H,Xing D,Li QQ
    Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies.
    Plant Physiol., 2009. 151(3): p. 1546-56
    [PMID:19748916]
  3. Zheng J, et al.
    Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray.
    PLoS ONE, 2011. 6(2): p. e14719
    [PMID:21364912]
  4. Xing D, et al.
    The regulatory role of Pcf11-similar-4 (PCFS4) in Arabidopsis development by genome-wide physical interactions with target loci.
    BMC Genomics, 2013. 14: p. 598
    [PMID:24004414]
  5. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]