PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QJL2A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 128aa    MW: 14440.6 Da    PI: 7.3513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QJL2AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.6e-144894354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +v+++k+L
  Araip.QJL2A 48 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVVDHVKDL 94
                 79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4154594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-144698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-124894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.19E-104897No hitNo description
Gene3DG3DSA:4.10.280.105.0E-164897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1151100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGWKRLWVKL LVEDNLGLLL NDIEDCPGAL EMVKANRFPE DRAASASKSH SQAEKRRRDR  60
INAQLATLRK LIPKSDKMDK AALLGSVVDH VKDLKRKAMD VSKSITVPSE TDEVTIIECD  120
PDQDERLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QJL2A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931276.13e-54transcription factor bHLH51
RefseqXP_016167517.13e-54transcription factor bHLH51
RefseqXP_025609140.13e-54transcription factor bHLH51
RefseqXP_025666270.13e-54transcription factor bHLH51
SwissprotQ9XEF02e-21BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A444WZG61e-67A0A444WZG6_ARAHY; Uncharacterized protein
STRINGXP_009345143.13e-43(Pyrus x bretschneideri)
STRINGXP_008374114.13e-43(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-24bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]