PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QQN2T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 365aa    MW: 41323 Da    PI: 6.2016
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QQN2TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-1967116254
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  +y+GVr+++ +g+++AeIrdp++ng  +r++lg++  +eeAa a+++a+ kl+
  Araip.QQN2T  67 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYEKEEEAALAYDRAAFKLR 116
                  8********.***********9998..************************98 PP
2AP261.42.1e-19201251255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  Araip.QQN2T 201 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETEEKAAIAYDKAAFKMRG 251
                  8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.97E-2566116No hitNo description
PfamPF008472.0E-1367117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-2567117IPR001471AP2/ERF domain
SMARTSM003808.7E-2767132IPR001471AP2/ERF domain
PROSITE profilePS5103221.25967126IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1867118IPR016177DNA-binding domain
CDDcd000182.31E-30200261No hitNo description
PfamPF008472.3E-13201251IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23201260IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-32201260IPR001471AP2/ERF domain
SMARTSM003802.7E-38201265IPR001471AP2/ERF domain
PROSITE profilePS5103224.777201259IPR001471AP2/ERF domain
PRINTSPR003674.1E-13202213IPR001471AP2/ERF domain
PRINTSPR003674.1E-13241261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDSDYEFLES VQEYLLGHDS NNTVDLFDHN TLQSPSHNPL PNPKSDILQE QERDTNENEH  60
APPTWKRYRG VRRRPWGKFA AEIRDPKKNG ARVWLGTYEK EEEAALAYDR AAFKLRALQK  120
NMASITIMDS SESAYLEYIQ QYLLENDSII FTNDLKMDDS KSCQAGSNPN CDSISDTTSH  180
SESPTGASAG REVHAPPTWK RYRGVRRRPW GKFAAEIRDP KKNGARVWLG TYETEEKAAI  240
AYDKAAFKMR GRKAKLNFPH LIGSDEKSVS SSELSSEPVI VSAVKRISPE PCLPSSPSSE  300
DDSNSPGSKR RRNLADLLNK IAKNRNQTNK VVKMDPEANV ADYWLNDEFN MILFFAVGVD  360
DQEVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2866266470ATERF1
3gcc_A1e-2866266470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QQN2T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3557850.0KC355785.1 Arachis hypogaea clone Unigene12659 ethylene-responsive transcription factor (ERF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196776.11e-150ethylene-responsive transcription factor 13-like
RefseqXP_025649806.11e-150ethylene-responsive transcription factor 13
TrEMBLA0A445DC191e-136A0A445DC19_ARAHY; Uncharacterized protein
STRINGXP_004492940.13e-62(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-36ethylene-responsive element binding factor 13