PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QR01G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 502aa    MW: 58715.9 Da    PI: 8.6814
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QR01GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.92.5e-1650136191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY+ Y+k vGFs+++s++++    ++i+++  vCs+eg+ +++ +    + +t+a+   +C a++ v+ +k  + w ++k++l+H+H+++p
  Araip.QR01G  50 KFYKYYSKLVGFSTKISNTTRD--GDKIKNQLIVCSREGRWKSKISP---TLKTNASCGLNCPARIYVHIMKdVDLWTISKIVLNHSHPCCP 136
                  6****************98776..8889************9998777...999******************989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1350136IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.889288324IPR007527Zinc finger, SWIM-type
SMARTSM005750.002299326IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MNESSSNQLN DCDLDDSSET HQFDETSCVV DEKFVPKVGM IFKTLEGARK FYKYYSKLVG  60
FSTKISNTTR DGDKIKNQLI VCSREGRWKS KISPTLKTNA SCGLNCPARI YVHIMKDVDL  120
WTISKIVLNH SHPCCPNQAE MLKQHRELSI MHVFGSPQLI NLVRFAELYE DRHIWILVYL  180
DHHFWAEMRS TQRSESMHSF FNKFITYNSS LRQFVKQYDN CLASREQTER EFNTADFYTC  240
VYTHEKFREV QAQFRGKVNC ITRSMHSTLG FTTYEVIEQV FNSTFNKFVV TYDAVSRDVK  300
CHCLLFESRG ISCRHSLSVL SFERVDNVAP KYILERWSKN IKRRYTHIKS NQDEPVLEPR  360
SKRFDELLNL LDSESSIQSS STLYNTPDMN YPRQDFTKYL KRGNTKTIRN PVEYHLLCPI  420
GHPRCRGSIK SIQVRELGFM EVNQHQNKNT ALNGLFLPLF LVFDSLSQEA EHMTCPILLS  480
DVVHTKDRRL MDRGGHAYRR PQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QR01G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960283.11e-127protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A444ZLV20.0A0A444ZLV2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.19e-25FAR1 family protein