PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.QW6LV

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 138aa MW: 15706.1 Da PI: 9.3038

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.QW6LV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.8	9.8e-15	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i+++ vC++eg+ +++ + + +t+++ + a++ v+ +k g w ++k++l+H+H+++p Araip.QW6LV 51 KFYKHYSKFAGFSTKIRNTTRD--GDKIKNQLIVCTREGRWKSKISP---TLKTNPSAGLNFPARIYVHIMKdVGLWTISKVVLNHSHPCCP 137 6**************98776..8889********9998777...999*************9989*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-12	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MNESTPNQLN ECDLDNSSET FRFTVQASCV VDEKFVPKMG MIFKTLEEAG KFYKHYSKFA 60 GFSTKIRNTT RDGDKIKNQL IVCTREGRWK SKISPTLKTN PSAGLNFPAR IYVHIMKDVG 120 LWTISKVVLN HSHPCCPD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.QW6LV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172294.1	5e-84	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444XC17	2e-83	A0A444XC17_ARAHY; Uncharacterized protein
TrEMBL	A0A445B8J0	1e-81	A0A445B8J0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-09	FAR1 family protein