PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.QX8RE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 147aa    MW: 16974.4 Da    PI: 9.4703
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.QX8REgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.13.5e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++ rqvtfskRrng+lKK +ELSvLCda++ +i fs+tgkl  yss
  Araip.QX8RE  9 KRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIAFSNTGKLSHYSS 59
                 79***********************************************96 PP
2K-box37.69.3e-14841431069
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                  +++++e l +e+a L++++ +L+  + ++lGe++  L+++eL +Le +L++s+ ++R+++
  Araip.QX8RE  84 HAHDQEDLLTEMAMLRRQNLSLEMGIQRYLGEGIAFLQYEELTKLEGELQSSVARVRKRQ 143
                  4566788999************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.193161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.61E-38278No hitNo description
SuperFamilySSF554551.06E-31287IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1085143IPR002487Transcription factor, K-box
PROSITE profilePS512978.67288147IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRNGLLK KTNELSVLCD AQIGLIAFSN TGKLSHYSSH  60
PYRMDQIIEN YQRSTGTHIM HHGHAHDQED LLTEMAMLRR QNLSLEMGIQ RYLGEGIAFL  120
QYEELTKLEG ELQSSVARVR KRQINCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18178176MEF2C
5f28_B6e-18178176MEF2C
5f28_C6e-18178176MEF2C
5f28_D6e-18178176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.QX8RE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961196.11e-102MADS-box protein FBP24-like
SwissprotQ9ATE52e-46FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A444YPE81e-100A0A444YPE8_ARAHY; Uncharacterized protein
STRINGXP_004498126.18e-63(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-44MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]